HsaINT0106870 @ hg19
Intron Retention
Gene
ENSG00000184956 | MUC6
Description
mucin 6, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:7517]
Coordinates
chr11:1019275-1020257:-
Coord C1 exon
chr11:1020090-1020257
Coord A exon
chr11:1019497-1020089
Coord C2 exon
chr11:1019275-1019496
Length
593 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
CGGGCGGCTGTCCTCTGCAGAAC
3' ss Score
8.53
Exon sequences
Seq C1 exon
GCTCACGGCCCACGCAAGTCTGGCCCATGACGGGAACCTCCACCACCATCGGGCTTCTCAGCTCCACCGGACCCTCACCCAGCTCTAATCACACCCCTGCCAGCCCCACCCAGACACCCCTCCTTCCAGCCACGCTCACATCCTCCAAGCCCACAGCCTCCTCGGGAG
Seq A exon
GTAAGGAGCCTCCAGCTGAGCCCATGGAGAGGGCAGCTGCAGGAGGTCCTAGGTACACCTCTGGGGTGGGCTTAGGGATGGCCCTGCTTCCTGGCTCACATCTGCCACTAAGCAGATTCCCAGCGTAGAACTTCCTATGCTTGGGAGCCAAACTGGGGATTTTTCGGAAAAACTTTTAAAGACAAGCTGGTCATGGCATGGGGCATTCCTTGCTGCTGGCTGCTGTCACTAGAAACCGTGTGGGACCTGCAGGGCCTCTGCCAGGCAGCCTGCCCCTGCCCCACACCGAGCAGGGCCCCATCTGCTGCCCAGGGACCCTGGAGGGGACAGGACGACAGTCCGTTCAGCTAAGCAAGGGTGGGCGCAGGAGCAGCCGCAGCCCCATAAGCATGTGGTCACTGCCCCAGCTCTGGCCACCACAGCCAGGAGTACGGTGGGAGGACCTAACAAAGGCAAGAGGAAGAGCCCCTCCAAGGAGGCTGAGTCCCGGACAGCAGGCCAGGGATCCCAGAAGCAGGGCAGGGGGCTGGGACACAAGCCTTCGAAATGCAGGCCCACAGCAAGGGGATGTTCCGGGCGGCTGTCCTCTGCAG
Seq C2 exon
AACCACCTAGACCAACCACGGCCGTCACCCCACAAGCCACATCAGGGCTGCCTCCCACAGCCACACTGAGATCGACAGCCACAAAACCCACAGTGACCCAGGCCACAACCAGGGCCACGGCGTCGACCGCCAGCCCAGCCACGACGTCCACAGCTCAGTCCACAACACGGACCACAATGACACTACCAACCCCAGCCACATCAGGGACAAGCCCCACGCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184956-MUC6:NM_005961:29
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTCTGGCCCATGACGG
R:
GCTGGGGTTGGTAGTGTCATT
Band lengths:
350-943
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)