MmuINT0102516 @ mm10
Intron Retention
Gene
ENSMUSG00000048191 | Muc6
Description
mucin 6, gastric [Source:MGI Symbol;Acc:MGI:2663233]
Coordinates
chr7:141641373-141642309:-
Coord C1 exon
chr7:141642130-141642309
Coord A exon
chr7:141641589-141642129
Coord C2 exon
chr7:141641373-141641588
Length
541 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
3' ss Seq
GCCACTACTTCCCTCTGCAGAAT
3' ss Score
9.45
Exon sequences
Seq C1 exon
GTTCACAGCCTACCACGGAAACCACCATCAGCACTGAGTTTCACAGTTCCACCTCTGCAAACACACCTGTGGCCCCCTCCTACCTGCCAGGTCTTCCGACCCCACCACCTTCAGCCCCATCCTCCACTGAGGAACTAACAGTCTGGACCACCCCCAAGGAATCCACAGTCTCCTCGGGAG
Seq A exon
GTAAAAATGGAGTGGGGAGCATAGTAGAACTCTAGGCTATGGAGGGTTACTACTTATGGCCTTCCCACTGAGATAGGCCTGAGGCAGTGTCTCAGCCCAGAAGTCACTGTACATGAAAGGCAGGATGAAGATTTTTCTGAAAACCTAGTTAACAACTCAAGCTGGTCACTCAAGGTGGCCATTCCAGGCTGTCTAACACTTCCAATAGAATATACATGGGAACTGCTGGGCCTCTACCCTGCAGTCCACCCTGCTCACACACCAAGCAATCCCAGATGCTGCTAGGAATGCTGAGGAGAGACCAACATCCTTCCAAAGAGCTGACGTGTGAGTAGAGAATTGAGAACCCGTGTCACAGCCCTGAGGTGAGCCCACCCTAGCCAGCCAGACTCCTGCAGGCTGGGGAAGGGACAAGACAGGTGTTCATCAAAATATGAAGAGCTAATAAGTGTCCTGAGGGCAGGAGCAAAGAGCAGGGGACTTGAACATGCAACTGGGAGAAGCAGGTGGGAAAAGATGCTGCCACTACTTCCCTCTGCAG
Seq C2 exon
AATACCCTCAAACCACCATGGCTGCCACACCTCCGACATCACCTTGGCCTCCTACATCCATACCGAAGTCAACACCCACAGAGCTCCCAGTGACACAGGCCACATCCAAGCCCACAGCATCTTCCCTCAGCTCATCCACGAAGACCACAGCTGAGTTAACAGAGAGTACCACAGTGACCTTGCTAACCTTAATGCCTGGGATGTCTACCAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048191:ENSMUST00000189314:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.967
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTCTGCAAACACACCTGT
R:
TTGGCTGGTAGACATCCCAGG
Band lengths:
346-887
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types