RnoINT0095778 @ rn6
Intron Retention
Gene
ENSRNOG00000056817 | Muc6
Description
mucin 6, oligomeric mucus/gel-forming [Source:RGD Symbol;Acc:628826]
Coordinates
chr1:214616406-214617363:-
Coord C1 exon
chr1:214617161-214617363
Coord A exon
chr1:214616625-214617160
Coord C2 exon
chr1:214616406-214616624
Length
536 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
3' ss Seq
GCCACTACTTCCCTCTACAGAAT
3' ss Score
8.75
Exon sequences
Seq C1 exon
GAGATCACATATGCTCTATACAGGTTCACAGCCTACTACTGCAACCCCCATCAGCACCGAGTTCCACAGTTCCAGCTCTACAAGCACACCTGTGGGCCCCTCCTACTTGCCAGGTCTTCCAACCCCACCGCCTTCAGCCCCATCCTCCACTGAGGAAGGAACAGACTGGACCACTCCAAAGAAATCCACAGTCTCCTCAGGAG
Seq A exon
GTAAAAATGGAGAGGGGAGCATAGTAGAATTCTAGGGTATGGAGGGTTACTACTTACGGTCTTCCCACTGAGATATGCCTGAGGTGGTGTCTCAGCACAGAACTAGCTGTGCATGAGAGGCAGGATGAAGATTTTTCCAAAAACCTAGTTGACAACTCAAGCTGGTCACTCAAGGTAGCATTCCAGGCTGTCTGGAACTTCTAATAGAATATCCATGGGAACTGCTGGGCCTCCACTCTGCAGCCCACCCTGCTCACACACCACGGCAATCCCAGATGCTGCTGGGGACACTGAGGAGAAACCAACATCCTTCCAAAGAGTATGAGTAGAGAACCGAGAACCTGTGTCATGGCCTGGGGGTGAGCCCACTCTAGGCAGACAGACAACAGCAGGCTGGGGAAGGGACAAGACAGGTGTTCATCAAGCTATAAAGAGATAACAATAAGTCTCCTGAGGGCCAGAGCAACGAGCAGGGGGCTTGAACATGCATCTGGAAAGCAGGTGGGAAAAAACATTGCCACTACTTCCCTCTACAG
Seq C2 exon
AATACCCCCAAACCACTGTGGCTACCAGACCACTGACATCACCTTTGTCTCCTACGTCTATACCGAAGTCAACACCCACAAGGCCCACAGTGACAGAGGCAACATCCAAACCCACAGCATCTTCCCTCAGCTCATCCACAAAGACCACAGCCGAGTTCACAGAGAGTACCACAGTGACACTGCTAACCTCAGTAATGACTGGGATGTCTACCAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056817:ENSRNOT00000087497:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.933 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCCTACTACTGCAACCC
R:
ACTCTCTGTGAACTCGGCTGT
Band lengths:
344-880
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]