HsaINT0107543 @ hg19
Intron Retention
Gene
ENSG00000006788 | MYH13
Description
myosin, heavy chain 13, skeletal muscle [Source:HGNC Symbol;Acc:7571]
Coordinates
chr17:10253873-10258100:-
Coord C1 exon
chr17:10257997-10258100
Coord A exon
chr17:10254012-10257996
Coord C2 exon
chr17:10253873-10254011
Length
3985 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGC
5' ss Score
6.16
3' ss Seq
TGTCCTTTTTTTCTTTCCAGAAT
3' ss Score
12.03
Exon sequences
Seq C1 exon
ACCTGCTTCTGATCTCCACCAACCCCTTCGACTTCCCCTTCGTGAGCCAAGGAGAGGTCACGGTAGCCAGTATCGATGACAGTGAAGAACTGCTGGCGACAGAT
Seq A exon
GTAAGCATGCCATTTATTTGTCTGTTTATGCACAGAATTATTGAGTTTATGAACTGAGAGACACGTTAGTGAGCTAATGGGAAAGCTGAAATCCAGGGATACTAAGTGATTAGACTCAAGATCTCAGAGATCAAGAGCTCAGAGAATTAGCACAGATTGGCCCCTCCCTACTCAGCTCCACCTCACAGCATTCCAAAATGGAAATCCAGAAGGTTCACCAAAGCAGGCCTTCAGTTCTGTTCTCTAACATTTTAACTGGAATGCATTTTTGCATTTATAAGATCTTTAACCTAACATTCGTTGAAAGTTTTCATGTTGCAAAACCATCTACATGGTTCTTCAAGAAAATTTAGAAAATATAAAAATGTATAAAGCAGAAAACCAAGCCCACTCTGTAATAGCCTCTCCATTTTTCTTTCTGCCTTTCACTTTAGGCTCACCTTAGACACTCAGCTCCTCAGTACACCTGTCAGGCCTGTGGTGTTTATTTTGGGGAAGTACCTGTAGGATTAATAATCTTAATAACAATAATAACCAAATATATTGAGCACTTACATGTGCCAGGCACTGAGATAAGTGGCTTTACCTGCATTGTCTCATTATAGTCTCAAAATTATGTCATTATTGTCTCCATTTTACAAATGTGGAAGCTGATTCTTAAAATATATATAATTTTCTGGAAGACACAATTCGTCAATGACAGAGTCTTTCCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTTTCCTTCCTTCCTCTCTCTCTCCTTCTTTCTTCTCTTCTTTTCTTTTCTTTCTTTTTTCAGACAGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAATGGCATGATCTCAGCTCACGGCAACCTCCGCCTCCTGGGTTCAAGAGATTCTCTTGCCTCAGCCTCCCAAGTAGCTGGAACTACAAGGCATGCACCACCATGCCTGGCTAATTTTGTGTGTGTGTATTTTTAGTAGAATTGGGGTTTCGCCATGTTGGCCAGGCTGGTCTCAAACTCCTGATCTCTGGTGATCCACCCAGCTCAGCCTCCCAAAGTGCTGGGATTACAAGCATGAGCCACTGCACCAGGCCCAATGACAGAGTATTTAAACACAGGTCTGCCTAACTACAGAGCTTACATTTTTAATTAAAGTATACCGTCTGTGAGCAATTCATCTCCACCCTTGTTGGCTCCACCCATACAAAAGCTTCAAGAGCTTGCGAAAAGGGGTCTTGTCCATCATCCTAGAGACACTGCCCCATGACCAGCTTCTTAGCCTTCATTTGGTGACATTTCCAGCTGATAATAATTGTTTTAACACAAATAGAAAAATTTTCATGATCAAATAAACTTGTTATCTTAGGTCTAATAGTGTTAAAAGAAAAATTTGAGACAAATTAAATTTAGCAGAGTTTATTTGTGCAAAGAATGATTCATGAGTTGGACCACACTCAGCACCTGGAGAGGCTCAGAGAGCTCCACCCAGCAACATGGCAGGCAGTATTTATAGGCAGAAAAAGGAAGTGACATACAGAAACAGCTTGATTAGGTACAGGTCTGCCTTTGCCTTATCTGCAGGTGGTGTGATGAAGCATTTGTGTTATATGCACAATGGCCCATCAGTTTGGCAGCCTGTGATTGGCTGAAGCTCAGCTGCTGTGATTGGCTGAGACTCAGCTGCTGTGATTGGCTGAAGCTCAGCTGCTGTGATTGGCTGAAGCTCAGCTGCTGTGACTGGCTGAGACTCAGCTATTTGTTACAAGAATATACTCTTAGGTTGCAGTTTGTTTACATACTAATTTAGGTTATAGTTTGCTATGTATGGAGGCAGTTTTAGACCAAATTTAATTTAAGTTGTTATATATTTTTAATGAGGTTTCCCCAGTCTTCACTAACTTGTAAGCACAGAAAGGGCCAGGCTAATGACTGCTACAAGGCCCCCATCCACTGAGAAAGGCCCACCTAAGGAATTCTAAAAGTCACCTTACCTAAGTCATGTCCTCACCAAGATGCCTTCTGCCAGATGCGGCTGTTGCTCCTTCCTCTCACGGAGCCTTTTTTTGGTTTTTTGTTTTTTGTTTTTTTTGAGATGGAGTCTCGCTCTGTCCCCAGGCTGGAGTGCAGTGGTGCGATCTCGGCTCACTGCAACTTCTGCCTCCCAGGTTCAAGCAATTCTCTGCCTCAGCCTCCCAAGTAGCTGGGATGACAGGCACCTGTCACCACGCTCGGCTAATTTTTGTATTTTTAGTAGAGAAGGGGTTTCCCCATGTTGGCCAGGCTGGTCTTGAACTCCTAGCCTTGTGATCCACCCACCTCGGCCTTCCAAAGTGCTGGGATTACAGATGTGAGCTACCGCGCCTGGCCTCACGGAGCTTTTATAGCCTGCCTGGTATAGTCTCCCTTTTTATGAACTCAAAGTCAACTGATTGGTAACTTCATAATGGGAGTGACATCCCATCATATACCCAGGTTCCACCTGCACCCCTTTGGAGATGACATTCTCCAAAAGGGTCCCCAGGCAGTGACGCTTTCACCTGCTCCTTTTAGTGTTTTTGAAAGAGTTCTTTCTCTTTTAACCTACAACGACCCTTCCCTAGGACAGAGATATGCAACCCTGAAATGGGATATGGATTCAAGGGATGGCCATCATGGCCTCGGAATCTCTCCTCCCCATATATCCCAGCTCCTGGCATAGGCTCATTCTCCACTAAAGGGGGTGCCACTCCAAGAATGCTTGACTCTCCAATATCATCCTGCTGGTGTTGGCCTATTGGGTCTATCCTACGTGCTCACCAAACACGTCCAAACATGTTTCAATCCTACCAATGGACACTCTACAGGCTCAGGCTGCAAACCCTACTGCATAATCAATATGTGTACCCCAGAGAAGGATTTCTTTTTGTTGAAACCTTTGTGGTGGAAGACAGGCAACATGATTATAAAACCAAACCAGCAATGACCCTAGGTTTTGAAGGGACCAAGACCTAACTCCAGTCCCAGTCTTATCACACCCTCCCTGTATGACAGGCTACTTACCAACTAGACCCTCAATTCTTCATCCAGAAATCTGGAAAAACCTGCACAGCTAAAGGGGCTTCATGGGGATTTAATAACATACAGATGATGCCTACCCAATGTCTAGCACATAGAAAGAGCTCTGCAAAAGCTTGCCCCTTTCTCATTTGGGAAATGATGATGCCATCTTTGATGATCTTCCCTTCCAGATCTAATATTCCATAATGCATATTGTCTTGAGTCTGAACAATGCTGGAACTCCTGGATTACAATGCCAAACTCTTAAGCCATTAAACATTATTTCCCAGTCATTCTCCATGACATTCCCAGCTCTCAGTATCATACAATGGTTCCCAATCGCCTCATCCAGAAAACTGCTCCCCCAAATCTATGTACAGTGAGAAAAGATCATAATCAGTTCTCTTTTTTTTTTTTTTTGAGATGGAGTCTCACTCTGTCTCCCAGGCTGGAGTGCAATGGTACAATCTTGGCTCACTCCAACCTCCGCCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCATCCTGAGTAGCTGGGACTACAGGTGCCAGCCACCATGCCTGGCTAATTTTTTGTATTTTTAGTAGAGATGGAGCGTCGCCATGTTGGCCAGGATGGTCTCAAACTCCTGACCTCGTAATCTGCCTGCCCTGGCCTCTCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGACTGTAATCAGTTCTTATTTGATGGAAGGAAACAGACAATTCACATCTTTTTCCCATAGTCTTCACCCACCCACACAAACACGTGAAACAAATGGTTTCTAATTTACCACATCCCCACCTGTCATCCACTTATTTGGGCAAATGCTGTCTCATATGCTATACAAAAAAGAGGTAAGGTCTTTGCCAAGAAAAGGCTGCATATGGATCCCTGATTCCTGCTATGACAGTTGTCCTTTTTTTCTTTCCAG
Seq C2 exon
AATGCCATTGACATCCTGGGCTTCAGCTCAGAGGAGAAAGTCGGGATCTACAAACTGACGGGAGCCGTGATGCATTATGGGAACATGAAGTTCAAGCAGAAGCAGCGTGAGGAGCAGGCGGAGCCAGACGGCACCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006788-MYH13:NM_003802:11
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.245
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)