GgaINT0129019 @ galGal3
Intron Retention
Gene
ENSGALG00000000779 | MYH13
Description
NA
Coordinates
chr18:328161-328580:-
Coord C1 exon
chr18:328477-328580
Coord A exon
chr18:328300-328476
Coord C2 exon
chr18:328161-328299
Length
177 bp
Sequences
Splice sites
5' ss Seq
GACGTGAGT
5' ss Score
9.22
3' ss Seq
CCGGTCTGTTCTGTCCGCAGAAC
3' ss Score
12.55
Exon sequences
Seq C1 exon
ATCTCCTTCTCATCTCGACCAACCCCTACGACTTCGCCTACGTGAGCCAAGGGGAAATTACCGTTGCCAGCATTGATGACAGCGAAGAGCTGTTGGCGACAGAC
Seq A exon
GTGAGTACGGCCGAGGAGCATCAGCATCCCGGCCGAGCCCGGATAGAAGCCTCGGCCTCTGCCGCCCCGCAGCGGCCGCTCCCGACGCTCACACGGAGAAGGCCGCGGCCCCGTCGCATCGTAGTGCCGCGGGCCGCGCTTCTCCGGCGTCGTCCGACCGGTCTGTTCTGTCCGCAG
Seq C2 exon
AACGCCGTGGATATCCTGGGCTTCAGCCCCGACGAGAAAGTGGGGATGTACAAGCTGACGGGGGCCGTCATGCACTACGGGAACATGAAGTTCAAGCAGAAGCAGCGGGAGGAGCAGGCGGAGCCGGACGGCACGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000779:ENSGALT00000001184:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.234
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTCTCATCTCGACCAACCC
R:
CTGCTCCTCCCGCTGCTT
Band lengths:
218-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]