HsaINT1024056 @ hg38
Intron Retention
Gene
ENSG00000006788 | MYH13
Description
myosin heavy chain 13 [Source:HGNC Symbol;Acc:HGNC:7571]
Coordinates
chr17:10350556-10354783:-
Coord C1 exon
chr17:10354680-10354783
Coord A exon
chr17:10350695-10354679
Coord C2 exon
chr17:10350556-10350694
Length
3985 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGC
5' ss Score
6.16
3' ss Seq
TGTCCTTTTTTTCTTTCCAGAAT
3' ss Score
12.03
Exon sequences
Seq C1 exon
ACCTGCTTCTGATCTCCACCAACCCCTTCGACTTCCCCTTCGTGAGCCAAGGAGAGGTCACGGTAGCCAGTATCGATGACAGTGAAGAACTGCTGGCGACAGAT
Seq A exon
GTAAGCATGCCATTTATTTGTCTGTTTATGCACAGAATTATTGAGTTTATGAACTGAGAGACACGTTAGTGAGCTAATGGGAAAGCTGAAATCCAGGGATACTAAGTGATTAGACTCAAGATCTCAGAGATCAAGAGCTCAGAGAATTAGCACAGATTGGCCCCTCCCTACTCAGCTCCACCTCACAGCATTCCAAAATGGAAATCCAGAAGGTTCACCAAAGCAGGCCTTCAGTTCTGTTCTCTAACATTTTAACTGGAATGCATTTTTGCATTTATAAGATCTTTAACCTAACATTCGTTGAAAGTTTTCATGTTGCAAAACCATCTACATGGTTCTTCAAGAAAATTTAGAAAATATAAAAATGTATAAAGCAGAAAACCAAGCCCACTCTGTAATAGCCTCTCCATTTTTCTTTCTGCCTTTCACTTTAGGCTCACCTTAGACACTCAGCTCCTCAGTACACCTGTCAGGCCTGTGGTGTTTATTTTGGGGAAGTACCTGTAGGATTAATAATCTTAATAACAATAATAACCAAATATATTGAGCACTTACATGTGCCAGGCACTGAGATAAGTGGCTTTACCTGCATTGTCTCATTATAGTCTCAAAATTATGTCATTATTGTCTCCATTTTACAAATGTGGAAGCTGATTCTTAAAATATATATAATTTTCTGGAAGACACAATTCGTCAATGACAGAGTCTTTCCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTTTCCTTCCTTCCTCTCTCTCTCCTTCTTTCTTCTCTTCTTTTCTTTTCTTTCTTTTTTCAGACAGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAATGGCATGATCTCAGCTCACGGCAACCTCCGCCTCCTGGGTTCAAGAGATTCTCTTGCCTCAGCCTCCCAAGTAGCTGGAACTACAAGGCATGCACCACCATGCCTGGCTAATTTTGTGTGTGTGTATTTTTAGTAGAATTGGGGTTTCGCCATGTTGGCCAGGCTGGTCTCAAACTCCTGATCTCTGGTGATCCACCCAGCTCAGCCTCCCAAAGTGCTGGGATTACAAGCATGAGCCACTGCACCAGGCCCAATGACAGAGTATTTAAACACAGGTCTGCCTAACTACAGAGCTTACATTTTTAATTAAAGTATACCGTCTGTGAGCAATTCATCTCCACCCTTGTTGGCTCCACCCATACAAAAGCTTCAAGAGCTTGCGAAAAGGGGTCTTGTCCATCATCCTAGAGACACTGCCCCATGACCAGCTTCTTAGCCTTCATTTGGTGACATTTCCAGCTGATAATAATTGTTTTAACACAAATAGAAAAATTTTCATGATCAAATAAACTTGTTATCTTAGGTCTAATAGTGTTAAAAGAAAAATTTGAGACAAATTAAATTTAGCAGAGTTTATTTGTGCAAAGAATGATTCATGAGTTGGACCACACTCAGCACCTGGAGAGGCTCAGAGAGCTCCACCCAGCAACATGGCAGGCAGTATTTATAGGCAGAAAAAGGAAGTGACATACAGAAACAGCTTGATTAGGTACAGGTCTGCCTTTGCCTTATCTGCAGGTGGTGTGATGAAGCATTTGTGTTATATGCACAATGGCCCATCAGTTTGGCAGCCTGTGATTGGCTGAAGCTCAGCTGCTGTGATTGGCTGAGACTCAGCTGCTGTGATTGGCTGAAGCTCAGCTGCTGTGATTGGCTGAAGCTCAGCTGCTGTGACTGGCTGAGACTCAGCTATTTGTTACAAGAATATACTCTTAGGTTGCAGTTTGTTTACATACTAATTTAGGTTATAGTTTGCTATGTATGGAGGCAGTTTTAGACCAAATTTAATTTAAGTTGTTATATATTTTTAATGAGGTTTCCCCAGTCTTCACTAACTTGTAAGCACAGAAAGGGCCAGGCTAATGACTGCTACAAGGCCCCCATCCACTGAGAAAGGCCCACCTAAGGAATTCTAAAAGTCACCTTACCTAAGTCATGTCCTCACCAAGATGCCTTCTGCCAGATGCGGCTGTTGCTCCTTCCTCTCACGGAGCCTTTTTTTGGTTTTTTGTTTTTTGTTTTTTTTGAGATGGAGTCTCGCTCTGTCCCCAGGCTGGAGTGCAGTGGTGCGATCTCGGCTCACTGCAACTTCTGCCTCCCAGGTTCAAGCAATTCTCTGCCTCAGCCTCCCAAGTAGCTGGGATGACAGGCACCTGTCACCACGCTCGGCTAATTTTTGTATTTTTAGTAGAGAAGGGGTTTCCCCATGTTGGCCAGGCTGGTCTTGAACTCCTAGCCTTGTGATCCACCCACCTCGGCCTTCCAAAGTGCTGGGATTACAGATGTGAGCTACCGCGCCTGGCCTCACGGAGCTTTTATAGCCTGCCTGGTATAGTCTCCCTTTTTATGAACTCAAAGTCAACTGATTGGTAACTTCATAATGGGAGTGACATCCCATCATATACCCAGGTTCCACCTGCACCCCTTTGGAGATGACATTCTCCAAAAGGGTCCCCAGGCAGTGACGCTTTCACCTGCTCCTTTTAGTGTTTTTGAAAGAGTTCTTTCTCTTTTAACCTACAACGACCCTTCCCTAGGACAGAGATATGCAACCCTGAAATGGGATATGGATTCAAGGGATGGCCATCATGGCCTCGGAATCTCTCCTCCCCATATATCCCAGCTCCTGGCATAGGCTCATTCTCCACTAAAGGGGGTGCCACTCCAAGAATGCTTGACTCTCCAATATCATCCTGCTGGTGTTGGCCTATTGGGTCTATCCTACGTGCTCACCAAACACGTCCAAACATGTTTCAATCCTACCAATGGACACTCTACAGGCTCAGGCTGCAAACCCTACTGCATAATCAATATGTGTACCCCAGAGAAGGATTTCTTTTTGTTGAAACCTTTGTGGTGGAAGACAGGCAACATGATTATAAAACCAAACCAGCAATGACCCTAGGTTTTGAAGGGACCAAGACCTAACTCCAGTCCCAGTCTTATCACACCCTCCCTGTATGACAGGCTACTTACCAACTAGACCCTCAATTCTTCATCCAGAAATCTGGAAAAACCTGCACAGCTAAAGGGGCTTCATGGGGATTTAATAACATACAGATGATGCCTACCCAATGTCTAGCACATAGAAAGAGCTCTGCAAAAGCTTGCCCCTTTCTCATTTGGGAAATGATGATGCCATCTTTGATGATCTTCCCTTCCAGATCTAATATTCCATAATGCATATTGTCTTGAGTCTGAACAATGCTGGAACTCCTGGATTACAATGCCAAACTCTTAAGCCATTAAACATTATTTCCCAGTCATTCTCCATGACATTCCCAGCTCTCAGTATCATACAATGGTTCCCAATCGCCTCATCCAGAAAACTGCTCCCCCAAATCTATGTACAGTGAGAAAAGATCATAATCAGTTCTCTTTTTTTTTTTTTTTGAGATGGAGTCTCACTCTGTCTCCCAGGCTGGAGTGCAATGGTACAATCTTGGCTCACTCCAACCTCCGCCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCATCCTGAGTAGCTGGGACTACAGGTGCCAGCCACCATGCCTGGCTAATTTTTTGTATTTTTAGTAGAGATGGAGCGTCGCCATGTTGGCCAGGATGGTCTCAAACTCCTGACCTCGTAATCTGCCTGCCCTGGCCTCTCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGACTGTAATCAGTTCTTATTTGATGGAAGGAAACAGACAATTCACATCTTTTTCCCATAGTCTTCACCCACCCACACAAACACGTGAAACAAATGGTTTCTAATTTACCACATCCCCACCTGTCATCCACTTATTTGGGCAAATGCTGTCTCATATGCTATACAAAAAAGAGGTAAGGTCTTTGCCAAGAAAAGGCTGCATATGGATCCCTGATTCCTGCTATGACAGTTGTCCTTTTTTTCTTTCCAG
Seq C2 exon
AATGCCATTGACATCCTGGGCTTCAGCTCAGAGGAGAAAGTCGGGATCTACAAACTGACGGGAGCCGTGATGCATTATGGGAACATGAAGTTCAAGCAGAAGCAGCGTGAGGAGCAGGCGGAGCCAGACGGCACCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006788:ENST00000252172:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.255
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains