MmuINT0103332 @ mm9
Intron Retention
Gene
ENSMUSG00000060180 | Myh13
Description
myosin, heavy polypeptide 13, skeletal muscle [Source:MGI Symbol;Acc:MGI:1339967]
Coordinates
chr11:67148401-67151281:+
Coord C1 exon
chr11:67148401-67148504
Coord A exon
chr11:67148505-67151142
Coord C2 exon
chr11:67151143-67151281
Length
2638 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGC
5' ss Score
6.16
3' ss Seq
GCCCCTTCTCTTCCTTTTAGAAT
3' ss Score
11.94
Exon sequences
Seq C1 exon
ACTTGCTTCTGATTTCAACCAACCCCTTCGACTTCCCTTTCGTGAGCCAAGGAGAGGTCACAGTAGCTAGCATCGATGACAGCGAGGAATTGTTGGCCACTGAT
Seq A exon
GTAAGCACGTATTTATTTGTTTGCATAGAGTAATACAGAGTTTGTGAGCTGAGGGGCATCTTAGCAAGCTCATGGGAAAATGGGGAATGCAGAGATACTAACCTGATTGGACTCACAGATTGCCCCCCCCCCCACCAAATTGCAATGCTTCAAAATGGGATCCACAAAGTTCTACAAGGCAGGCTACCAGTTCTACTCTCTACCATTTTGATATAAATCTCTTTTGCATTCATAATGTGTGTGGACATCTGTTGGAAGTCTTCATATTGCAGAAAAGTACAAAAAGGGCAAAAAGAGACCCTCCACTCTGCAGTGGAATCTTCATTTTCCTTTCTACCTTTATCCTAGACTCATCCCAGGCACCATCCTCAGCACACGGGGCAGACATGTAAGCTTTATCTGTAGGGATGCCCTGCAGATCTAATCACGTTAACAGTAATAACTAAATGTGTCGAGCACATCACAGAGACAACTAGCTTTACTTTTACAATTCAGTTAAGTCCTAAAAGCATCTTTGACATGTATATCACCATTTCCCCATTTTATGGATGTGGAAAACTGACTCTTAGAGTCCTAAAAGAAACTACACAACTTGCCTGAAGGTCTGTCTGTAAATGGAAACATGTCTAAACCCAAGTGTGCCCAACCAGGAGTGGAGTTCATCTCCGCTTTTCTTGGCTCCACTCTCATAGAAGCTTCAGAGGCTACAGAAATGAATCTTATCCTTCAGCAGGGCCCATCTAGCACCCGTCATCCTTAGCTTTATTCTGTGATGTTTCCAGGTAGAACTCATTGTCTAAAGCAAGTAGAAAATGTTCATGATCGAATAAGCCAAAGATAATGGTTTCCCCAGGCTTCAGTGTGTGAACACGAAGAAGAATCAGATTAAAAACTGGTGCTTCAGCCCCAGAGGAAGGATCTCCTACGGTGTCGATGGCAAATTAGTTTTCTGCCAATCCTTGCATCTTGATCCTTGGACACTCACATTCTTTCTGTGGAGTGTCATACTCTTTGCCCTCGCTCACCTGTGTACTTTAAGGACTCTTATAGACTACACTGCTTAAGTCAGTGTAAATGATACACAGTTGCATTGTATAGGCATGAGCGTAGATCATGCATGTGGCCAAAGGCAGCTGTGGATATGACCCAACACAAAAGCATAAACTTACTCTTAAAATTATCAGGTTGTTTTGCCTTTAAAAAAATTTCCCAGTTCTCAAACATGAACTTTATAGATTACAACATCATATCCAACATCAAAATATCTGGAAAATAGAAAAGCTTGTATAACATGCTTAGTGCAGTGAACTTTCCCCTCAAATAGTTTTAGTTGTTGTTGGTTGAATCCACAGATGAGGGCCCATCACACCAAAGGTCTCTCATGTCTACACCTTCACTCTTCCACTGTTCTCACTATTGGTGGCATTTCTCTTGAGTGGCAGTTAATAGCCTAGGAGAAGAATGCCTTTTGGGGATTGTGTTCCCAAGAGGTTCCCCAAAAAGTAACACTTTCTACTCATCCCTTCTAGAAATTAATGAAAGGGCCTCTCAATCTCCTGCAACAGCTCAATAAAACTTGCTAGGGACCACTGAGGTAAGATGTGAACTCAAGGATGACTACCATGGCCCCATGACCCTTCATTTTTTGCTAGATCCTTTCACGGGCTCTTCATCCCCACAGTGGAGTGTCATTCTAGGAGTGTCTCACTTCTTCAGTATCATCCCCCTGACTCATTTGGTCTATCCTACCAATTCAGACATGTCCAGATGTGTTTCAGCTCCACCAAAGGACATGTGTGGGCTGAAAACCTACTACATAATCAATGTGCACACCCCAGAGAAGAACATTTTTAAAAATCATTTATTACTTATCATTTTATTAGGCTTTATAGTAAGAAGATGGGCAAAATAGTTTTGAAACCAAGTCAGCAAAATCTGGATCCAGACTAGCTCTAGCCCCCATCCCATGGCATCCTCTCTGTAGGACCCTGGGTAGGTTCTCACCCTCAGAGAACCCTACTTCTTCACCCATAAGCCTGCATATCTACAAAGTATGTGGACATGAAGGGTGTACATACACACATATAGTTATACTTCCACATATACATAATATAAACCTACAAGGTATTCATGCAGACTTTATAACATATGGATAGCACCTCACCCAATATCTTATATAAAAGAGGGGTTCTACAAAAATGTGTCCTTAGATCATCTGGAAGTTGGTAATATCTCTGCTGACCTTCCCTTCCAGGTTTTAATATTCTGCAGTAAATTTATTAAATGACTGGCCATACTGGGATTCCCATGTTATAACAACAAACTGAAACTTTTGGAAATATCCCTCTATCACTGCAATTTTCTTCCTTCAGTATCATACGGTGGCTTCAATACCCTCATCCAGAAAATCACCTCATTTATATGTAGTGGGAGAGGTTACAGCTAGTTCTTATCTAATAAAAGAAAATAAATACTCCATTTTCTTCCCGTAATCTCCACTCACCTAAACAAACATATTTATAAAACCAGATTTTAGCTCTAAACTTGACACATCACACACATTCACCCACTCGTGTGAGCAAATGCTGTCTCGTCTGATACACAGTACGGATCCTTGAGCCCCTTCTCTTCCTTTTAG
Seq C2 exon
AATGCCATTGACATCCTGGGCTTTAGCCCGGAGGAGAAAGTTGGGATCTACAAGCTGACAGGGGCTGTGATGCATTATGGGAACATGAAGTTCAAACAGAAGCAGAGAGAGGAGCAGGCTGAGCCAGATGGCACGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060180-Myh13:NM_001081250:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.255
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: