HsaINT0107645 @ hg38
Intron Retention
Gene
ENSG00000144821 | MYH15
Description
myosin heavy chain 15 [Source:HGNC Symbol;Acc:HGNC:31073]
Coordinates
chr3:108421088-108428881:-
Coord C1 exon
chr3:108428492-108428881
Coord A exon
chr3:108421215-108428491
Coord C2 exon
chr3:108421088-108421214
Length
7277 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAT
5' ss Score
7.24
3' ss Seq
CCTTCTTTCTCAACTTATAGGCA
3' ss Score
10.22
Exon sequences
Seq C1 exon
ACTCAAATAAAGGATTTGAAAGAGAAACTAGAAGCTGAAAGGACCACTCGAGCCAAGATGGAAAGGGAGAGAGCTGACCTCACCCAAGACCTGGCTGACTTGAATGAGAGGCTGGAGGAGGTAGGAGGATCCAGTTTGGCTCAGCTGGAAATAACTAAGAAACAGGAAACCAAATTCCAGAAGCTGCACCGAGACATGGAAGAGGCCACTCTGCACTTTGAGACAACTTCTGCATCTTTGAAGAAGAGACATGCAGACAGCCTGGCTGAGCTCGAGGGCCAGGTAGAAAATCTACAGCAGGTCAAGCAGAAACTGGAAAAAGACAAGAGTGACTTGCAGCTAGAAGTAGATGACCTCCTGACCCGTGTTGAGCAGATGACAAGAGCTAAG
Seq A exon
GTAGATACTCCCATGCCATCCTCGTGGTCTTCTGAACATGGAAGTAGGGAGGGGAAGAAATGGGAGGGGAGGGAAAAGAAAAATAAGCCAGCTTAGTGACTCAGTGTATTTTCTAATGAAGACTATAGTCCTTTGGACGGAATAGATCAGGCCTGACCTTAGTGGTCATTGTTAAGGTCACACAGCCATCACCAGAATGTGACCTGACAGTGGCCTCTGGTTTTAACAGAATTCAAATCCATGTTCCTTATGGATTTTTTTAGTGATTGCACAAGTAAGTGAGCTGGAAATCTGAGGCCACTATCTATGTCTGTCTTGAAGAATGACTTTTGTTATAAGTGCTCCTCAGTGATGGCCTGGATACTCCTAGAACCTATCTGAATGAATGGTGTACACAAACAGCTTTGCTGAGAGGAGGGAACTTTTTCTCCCTCAAGTCCTCTGGCATCTTTTTAATCAGCCAGTACTATAAGAAAGGTTCATCACATGTTCTTTCTTTACTGAGCCCATTAGCCTATATGCTGCAAGCTGTCATGTCAAATGGTTACTATGAGATCATCGAAATCAGCGACCCTGTCTTTTGGTAGTTGAGAGGAGCTTTGCTTTAGATTAAGCAGAGCAAATGGCTAGTTGCTGCAACCTTCTCTCCTTGTGAGCAGATTTTATAAAGTCATCTGGGAAAGACATGGCCTGACAATAAAGCTTGATCTCCATGGACTATGGTTAGAAAAATGTAGAATATCTTCAGTGATATGGAGTGGTTTCTGAAATATTTAATATTAATTCCTTTTAAATACCATACTGAGTAGAAAGAAACAGTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTTGTGTGTGTGTGTGTGTGTCTTAGTCCATTCCTGCTGCTGTAATGAAATACCACAGACTGGGTAATTTACAAATAATAGAAATTTATTTTTCACAGTTCTGGAGGCTGGAAAGTCCAAGATCAAGGTAGCAGCAGGTTTATTGTCTGGTGAGGTCTCTCTGCTTCTAAGATGGTGCCTCTTGCTGCATCCTCACATTGCAGAAGAGCAAAAAGGGGAAAGGGACAGATGCTCCCTTGTACCAGTCCCATTGATGAAGGCTCCTATCCTCATGACTTCATCACCTCCTAAAGGCCCCATCTAACACTATCACACTGGCCATTCTTTCAACATGAATTTTAGGGGGACATATTCAGTCCATAGCATTCTACCTCTGGCCCCCCAAATTTATGTCCTTCACATAAGCAAAATACATTCATTCTACCTCAATAGGTTCCAAAGACTTAAGTCATTTCAGCGTCAACTCAAAAGTCTAAAGTCTCATCTAAATCATATAGGAGTGAAACTCAAGGCATGATTCATCTTGAGGCAAATTCCTCCTCCAACTGTGAGCTTGTGAAATCAAACAAGTTATGTGTTTCCACAATAAAATAGTGGAACAGGCATAGCATAGACATTCCCATTCCGAAAAACAGAGAAATCAGAAAGAAAAAAGAGGTGACAAAGGGAAAAGCCCAACAGAAAACACAGCAAACAACATTAAATCTTGAAAGTGGGGAATAATCTTTTTGACTCCATGTCTGACCTTCTGGACATACTGGGGTGGAGTTTGGGTCCCCAGGGCCCCATGTAGCACTGCCCCCCCCTGGCAGGAGCTCTCAGGAATTGAAGTTGGGTGCTTGTGGCTCTCCCAGGTTAGTGTTGCATGCTGGTGGCTCTACAAGTCTGGGGTGTTGGGGGCAGCTCTGCCCTCACAGTACCACCACTGCCATAGTGGGGGCTGTCTGTGGTGGTCCTGCTTCCATGGCAATTCTCTGCCTGAACCCCAAGGCTCTCCAAAATATCCTTTGAAATCTAGGTGGAAGAGCTATGCTTCCATATCTCCTGCAGAGTTAGCACTGTATGGATGCTGCTATGGTTTACAGCATGTGCCTTCCAGAGTGGTGACCTGAGCTGAACCTGGGCCTGCCTGAGTGGCAGAGGAGCACTGAACTGGCATGTGGGGAGCAAAGACTTGAGGCAGCCCTGGGCAGCAAGCTCTGAGGTCTCAAGGGAATCCTCTCTTGAAATCACGTTTCCATCAAGGCCCTGGCCTTCTGGGCCTTTGTGGGTGGGGCAGCCACAAAGGTCTCAGAAATGCCTTCAGGGTCATTAGTCCATCCTCCTGATGAATAGCACCTGTCTTCTTTCTATCCCTACTAATTTCCTTATCAAATGTTTGGTTGTCTATGTCCTTAGGGTTTTTTTTTTTTTTCTGAAAATACTTTTTTATTCTTCACAATCTGGCCAGGCTGAGAATTTTCTAAATCTTTCAATTCTGCTTCTCTTTGATTATACATTTCATCTTTATTTCTCTCTCTTCATATTTTGTTTTAAGCAATCAAGAGAAGCCATGGAGCCCTGAACACTTTCTTTAAGGATTTCTTCCACCAAATATCCTAGTTTATCACTCTTAAATTTTGCCTTCCACAAGGGACCAGGGCATAGTTCAGCCAAGTTCTTTGGCATTTTGTAACAAGGATGGTCTGTCTTCCAGTTTCCAATAGGATATTCCCCATTTCCATTTAAGACCTCAGCAGAATTGCCTTTACTGTCTGTTTTACTACCAGCATTGTAATCACAGCCATCCAACTATCTCTAAGAAGATTAATTCTCTCTCTACAGCTCTCCTCTTCTTGTGAGTCCTCATCAGAAGGATTCTTAATGTTCCATTCATGGGAATATAGGCTTTTTCTAGCAGTAGGTGTGTATCTCACTACCTCCTTACTCTTTAATCCCTGCCATGTGTCTTTGTTTCTCCTGAAGCTGGCACTTCCTCTGAACATCTCTGTCACTGGCACCTGGTTTCTTTTTATAACTCACGTTCTAAGTCTCAACCACTTCTTTCCTCCCTATTTGCTTTTCAGTCAATTATCGCAGCAGGTCAGTTTTTACCATCTCATAGTTTTCCATTCCCATTCCCATGTAGGTCTGTCTACTTTTTAAGTAGATTACTGCAGTGGTTTCCTAAATTATCTTTTTTGCTTCTAGTCTTCCTTTTTTCAAACCATCCTATATTTATATGCCCAAATTAATATTTGTAAAGTATTTAGAATATTCATAAAGCACGGATTTATTGAATTATGTCCCTGCTTAAAAATGAACTCCAAACTTCTGCTTTCAAGGTACCTTGTAACCTTTGATCAGAGTCAACCAGTCTTGCCAGTTTTAGATCCCATTGCTTTGTTTCATGGACCTTCCATTTCAGGTTGCCTTTAAACAAATATTCATTTTTACACCAATCTGCCTTTTCCAAACTAATTATTCTCTTTGGAATGCTCAAGTTCAACCTCCTGCATTAAAGACTTACCTGTTTTTGAGTTCCTGTAGCACTTTTGGGGTCCCTCTTTATACTTATGCATTATCTAGTCTTTTAACCTTGCTAACATTGAAAGCAGAAACTAGGTCTCATTTTTCATGTTTACTACAGTGCTTTGTAGAGTCTCTGCACTCAATTACTAGCATCAACTTTTACGTATACCTCTTGGAGCTCATAGATTCAGTGACTTGTCCAAGGTCACACAATTCTATGGAAGAGATGAACTCCAATTCCAAATCCTGTGTATGTCTGTTGGTGAGCATGTCCTGTTACTGCTTTAAATATTTGTTGGCATGATAAATTGTTTCTGTTAACTCTCATAGGCATATACATTAGGCTAAACTGTTCCTTGAATTGTTTACTTTATCATTTTATGAATTATAATGGCAAGAATGCCAATGCTGAGTGGTACAGTGGAGACTGAAGCATTTTCAAAAGCATGTTATGCTGACAGAGAGGCTCAGGGCAATTTAGAAGTTATAGGAAATTTCACAATTATCTTGATTATTTTGAATTCCCATTGGTCCCTGCATTTCTGGGAGGCAGCATTTTTATGCATCATTTTAAGAATCAGCTATAAGATAAATGTGCCTTATTCTATTAACCTTCTCATCCCTGGTATCAAAACATACCGCTTATCCTTATGCTTAAATTAAAAATTCTTTTGAGGGTACAACTCTTTTGCATGCTATATCCCCATATAGGCCACTGTTAGATAAACAATCTAATTGTCTTTTTGCAGATCCTGTTTATGAAAATACTTTATACATGGAAACACTATACCAGTGGTTAGCAGTGCCTATGTGGATACCTACCATGTGAAGCTATACCTAAGGGCAAGTGCCTTTTCTATCTGTCCAAGTGGGCTGCCCACTCTACAGATACACACAGCCCAGCTGGCCTTCACCACGTGGAGACCTCTCTTGAAAAACTGGGAAGTCTTTGGCTCTTTTTCTTACCATTTCCACGCACCATTGACTAAGTTGTCTTGTAGAGATCCGTGCTTTTTCACCCTAAGCACACAGGTGCATAGCACAGCATATTCAGGGCCCTAAACAGATGCCATTTTTCACACCTGGATATGTTCCTCCTGGCTCAGTTAACAGGTCATTTACTATTGGAGACATCATAAAATAAAAATGGTTTTCATAATCATCCTATTTTTATCCATTTTCCTCTGGAACCCAGGATTCATGACAATTTGGGCCACCTAGGACATCAAGTCGATTAATCCTTAATATTTCCTTTATCACCACTTCATACAACAGATGTTTAGAAATCTAATATTTGACATTTTCTGTGTGTGTGTGCATCTGCACAGGCAGTTTCAGTTCGAATTCCAATTCTGACATTTAATAGCTGTGTGAATTTGGGCTAGTTATTTAGCCTCTCTGGTGCTCAGTTTTCTCATTTGTAGAAAGAGGCAATCTGAACTTTTGAGAGATATCGTGAGGAAGAAAATGAGCATGCCAACTTTGACTGTCAAAGTCATTTTCAGAAGTGAGAGCAAACAAATTCAACATATAATTAGAAACTGTGCAGACAACCTAAAAATTGTCACATTGATCACTACTATAGCTTTCTTCTAGTTAGGAGTGGAGAGTGGGGACAATTGAGCATGTCTGGCATTTAACATTAATGCTCTAACCTATGTGAGGTTGATGGCATCGTTCGAGAAACTGGCCATTGAATCTCTGTTAAGTCTGTTTCTACCAAGCTTGGGTGTGCTGTAGGACATCTGTGAACTGGAACTACATAACACTGCATTGGAGATATAAGAAGACATAATTCAGTAGTCTTTCAGAGAATAGCCATTAGTAAGTGAGACAGCCAGGTGGGAGGGGGTCCCTGGAGAAACTCCAACCAGCCTGCCCACTGGAGTGGAGCCTCGGAAACTTCACGCCATTTGCATTGGGTTGAAGCCTGGCCCCTCCTCTTCCTGTGTGGAACCTGGGATTCAAGCTGCGGGCGGCAAGCGCTCAAGCAGGGACTCTGGCCTTGTGAGAGTCCCTGTTTCCCCCTTTTCTTCCTTTTCACCTAATCAAACCCTGTCTTACTCACCATTCAAATTGTCTGTGAGCCTGATTTTTTGTGGCCGGGGACAAAGAACCCCATCTTTAGCTGAACTAAGGAAAAGTCCTGCAACATAGCATGAAGGAAGCAATCTTAAACAGAGCGTAGGTTCCAGCTAGAGATGGCCTAGGTTTTGGCTGATACAGAAGTTTTCCAGAGGACTAAACCTGGCATCACCTTTGAAATATTCCTGGTCCTTTGGCCATTGCTCTATCATAACAATTAGGTTAACACTGAAAACTATTAGGCTCACCATCAGCTTTCATCATCTCACCAGACCTCACTGTTTTCTCAAAATTTCATTGGTGTAATCTCTTCTTTGTCTCCCAGTTCTTCCATTTCCATAGCATACTTTCTTTGTACAGACAAAGGCCTCATGGACTGCTGTATTAATTGAGATTTAAAACATAGAGCTCAGAAGAGAGCTGGGTATGTAACAAGCACCCAATAAATTAACTGCTGCTGCTATTATCATTAATAGTGTCATCATCATCATCACCCACGATGGGGCAGATGGAAGGCATTCAAAGATCGCCTATAATCCCAGCACTTTGGGAAGCTGAGGCGGGTGGATCACAAGGTCAGGAGTTCGAGACCAGCCTGACCAAAATGGTGAAACCCCATCTTTACTAAAAATACAAAAATTAGCTGGGCATGGTGGCGCATGCCTATAATCCCACCTACTCAGGGGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAAGTGGAGGTTACAGTGAGCCAAGATCGTGCCATTGCACTCCAGCCTGGTGACAGAGTGAGCCTCTGTCTCAAAAAAAAAAAAAAAAGATAATAAAAAGATAATTTATACATGAGTTTCATCAAAACAGCTATGTAAAATCTGTAGAACCATGGAAGACCACCACCAATGTAATTTTACTGTTTCTGACCATATAAATAATAAGAATGCAAACTATAGTTAATTTGTATGTGAAGGGGATACCTCATCTTACATTTGGCAACTCTTAGTCCCGTCTGAGGATCTTGGGTCTCAAAACCACTAGCATGAGTTCTCAGAGTGTGGCAAGAGTCTGGCGATTAGACTGGTTACTTTAATTGGGTAAAAGTGCAAAGGCCAATGTCATATCTTTTTCTCCAGGCATGAAAAGCCAATTCTGAGAAGTTGGGTTTGGGGATTGAAGTGTTAACCCAACAGGGTCATCTTGAGATTGTAGCCATAGTGATCAGGAGGGTACAGTTGCTTTGGCAGCTCACATTTTGTTATTAGGCTGTTGCGGCTTAGATCCATCCCTTTCTTCTATCCTGCTTGGGCAGCCTTCTAGATTTCCTTCCTCCTCCTTCCCCTTCTTACCTCTCTTCCTTCCCCTTCGTCTGCCTCTCCACCCTTGCATATTGCTCTCCTATGTGCCAGGCACTATTCTATACAATAGGGGGTATATCTTTAAACTGGATCTCTACCCTCATGAGAGTTATATTCTAGTGAAAAAGACAGTTAAATATGTACTGTCAGAAAAGGATCATGTATCTCATTAGCGTTTGACATGTTTCCTTCTCCAGAAAAGTAAATAATTCTAGAAAGGATCCTAATACCCAGGAAGTTGGGTGTCTCCCGTGACACCTATACTCTGCAAAGTTTAGGCCTCTTGGGGTCCAGACCCTAGAGTTAATTGTGCTTGCTGAAATCAGAAGATGTGATCTCCCAATGCTGGCTGAGCTCTTTACTACAGAAGAGAGCATGCGGATCCCTGGAGCCACTCCTCCCCTCTTCCTTTGTGCAGCTGATTCAGAGTATCCTCTGTGAGCCCTGACCAGCCCTTCTTTCTCAACTTATAG
Seq C2 exon
GCAAATGCTGAGAAACTCTGTACTCTATATGAAGAGCGCTTGCATGAAGCAACTGCAAAGCTAGATAAGGTGACTCAGTTGGCAAATGACCTGGCAGCACAAAAGACAAAGCTGTGGAGTGAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144821:ENST00000273353:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.592 A=NA C2=0.023
Domain overlap (PFAM):
C1:
PF131661=AAA_13=PD(29.8=55.4),PF045827=Reo_sigmaC=PD(15.7=16.2),PF087025=Fib_alpha=PD(13.9=12.3),PF0157614=Myosin_tail_1=FE(15.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development