HsaINT0107684 @ hg19
Intron Retention
Gene
ENSG00000125414 | MYH2
Description
myosin, heavy chain 2, skeletal muscle, adult [Source:HGNC Symbol;Acc:7572]
Coordinates
chr17:10442761-10443383:-
Coord C1 exon
chr17:10443245-10443383
Coord A exon
chr17:10442880-10443244
Coord C2 exon
chr17:10442761-10442879
Length
365 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCA
5' ss Score
7.22
3' ss Seq
CTACTCTTTCTTCTTTTTAGTTG
3' ss Score
9.65
Exon sequences
Seq C1 exon
AGTGCTATTGATATTTTGGGCTTTACTAATGAAGAAAAGGTCTCCATTTACAAGCTCACGGGGGCTGTGATGCATTATGGGAACCTAAAATTTAAGCAAAAGCAGCGTGAGGAGCAAGCAGAGCCAGATGGCACAGAAG
Seq A exon
GTATCAACTAAGTCACTCCCATGATTTTGCATTTGTTTGAAAATCACATTCTTAACTTGTTACCCAGGAATTTTCCTAGGGAAGGTAAATTCACTTTTAAGAATTAAGTTTTAAAGTATCTGTATACCTAAATAATGTGCAATGGGAAACATAAGCACTAGGTAGGTGTTTCCTATAATTATTGAAGTTCTTTAGGGCAAACTACCCCATAATCAAAAACTTGAACTTAATGAACAAATGGGTAAGGATACTCAGAAAGAGATATTTAAAACACTGCACAAAATACTTGTAGTTTAAAAAATATTTTTAAGGAAGTGGGTTTCTTTGGGCCACAATAACATTGTTCTACTCTTTCTTCTTTTTAG
Seq C2 exon
TTGCTGACAAGGCGGCCTACCTCCAGAGTCTGAACTCTGCAGATCTGCTCAAAGCTCTCTGCTACCCCAGGGTCAAGGTCGGCAATGAGTATGTCACCAAAGGCCAGACTGTAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125414-MYH2:NM_001100112:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.277 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCTATTGATATTTTGGGCTTT
R:
TCTACAGTCTGGCCTTTGGTGA
Band lengths:
254-619
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)