MmuINT0103415 @ mm9
Intron Retention
Gene
ENSMUSG00000033196 | Myh2
Description
myosin, heavy polypeptide 2, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339710]
Coordinates
chr11:66992340-66992911:+
Coord C1 exon
chr11:66992340-66992478
Coord A exon
chr11:66992479-66992792
Coord C2 exon
chr11:66992793-66992911
Length
314 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCG
5' ss Score
9.67
3' ss Seq
GTATCCATGCTTTCTTTTAGTTG
3' ss Score
6.92
Exon sequences
Seq C1 exon
AGTGCTATCGACATTTTGGGCTTTACAAATGATGAAAAAGTCTCCATCTATAAGCTCACCGGTGCTGTGATGCATTATGGGAACATGAAGTTCAAGCAGAAGCAGCGGGAGGAGCAGGCAGAGCCAGATGGCACCGAAG
Seq A exon
GTACCGGCTGCGTCTTCCACCTGACGTCGTGCTTCGTTTGAAGCTCATGTTCTTAATGTGTTATTCTGAGTTTTCCTAAGAAGGCAAACTCACATTTCAGATCTGAGCTTTATAGAGCACTTAAATAATATGCTATGTAAAGCACAAACATAATTTGGGGTAGTCAAGGTCTTGGACTCAGTAAGAACATAGGCAAGACTATTAAAATTATACTGAAAATTCTGCACAACATGCTTGAAGATAAAGTTGTTTTTGGTTTTTAAGAAATGGATTTCTTTGTACCCTAATACCATTGTATCCATGCTTTCTTTTAG
Seq C2 exon
TTGCTGACAAAGCTGCCTATCTTCAGGGTCTGAACTCTGCTGACCTGCTCAAAGCCCTCTGCTACCCCAGGGTCAAGGTCGGCAATGAGTACGTCACCAAAGGCCAGACTGTCGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033196-Myh2:NM_001039545:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.277 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCTATCGACATTTTGGGCT
R:
GCTCGACAGTCTGGCCTTTG
Band lengths:
256-570
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: