RnoINT0096268 @ rn6
Intron Retention
Gene
ENSRNOG00000049695 | Myh1
Description
myosin heavy chain 1 [Source:RGD Symbol;Acc:735061]
Coordinates
chr10:53719406-53719989:+
Coord C1 exon
chr10:53719406-53719544
Coord A exon
chr10:53719545-53719870
Coord C2 exon
chr10:53719871-53719989
Length
326 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCA
5' ss Score
7.87
3' ss Seq
GTATCCATGCTTCCTTTTAGTGG
3' ss Score
6.29
Exon sequences
Seq C1 exon
AGTGCTATTGACATTCTGGGCTTTACAAATGATGAAAAGGTCTCCATCTATAAGCTCACGGGAGCTGTGATGCATTATGGGAACATGAAGTTCAAGCAGAAGCAGCGGGAAGAACAGGCTGAGCCGGATGGCACGGAAG
Seq A exon
GTACCAGCTGTGTCTTCCACCTGACTTCGTGCTTCATTTGAAGCTCGTGTTCTTAGCGTGTTATTCTGAGTTTTCCTGAGAAGGCAAACTCACATTTCAGATCTGAGCTTTATAGGGCACTTAAATAATATGCTATGTAAAGTACAGAAATCATTTGGGGGTAATCATGGTCTTGAACGCAGTAAGAACATAGGCAAGGCTATTAAAAATATACTGAAAACTCTGCAAAACATGCTTGAAGATGGAGTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAAATGGGTTTCTTTGCACCCTAATACCATTGTATCCATGCTTCCTTTTAG
Seq C2 exon
TGGCTGACAAGGCTGCCTATCTTCAGGGTCTGAACTCTGCTGACCTGCTCAAAGCCCTTTGTTACCCCAGGGTCAAGGTCGGCAATGAGTACGTCACCAAAGGCCAGACTGTGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049695:ENSRNOT00000004236:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.277 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(10.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(8.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCTATTGACATTCTGGGCT
R:
GCTCCACAGTCTGGCCTTTG
Band lengths:
256-582
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]