HsaINT0107819 @ hg38
Intron Retention
Gene
ENSG00000197616 | MYH6
Description
myosin heavy chain 6 [Source:HGNC Symbol;Acc:HGNC:7576]
Coordinates
chr14:23388155-23389055:-
Coord C1 exon
chr14:23388859-23389055
Coord A exon
chr14:23388339-23388858
Coord C2 exon
chr14:23388155-23388338
Length
520 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGC
5' ss Score
6.39
3' ss Seq
CTCCACCCTCACCTGGGCAGAAA
3' ss Score
5.19
Exon sequences
Seq C1 exon
GCGAAGAACGCCCTGGCCCATGCACTGCAGTCGGCCCGGCATGACTGCGACCTGCTGCGGGAGCAGTACGAGGAGGAGACAGAGGCCAAGGCCGAGCTGCAGCGCGTCCTGTCCAAGGCCAACTCGGAGGTGGCCCAGTGGAGGACCAAGTATGAGACGGACGCCATTCAGCGGACTGAGGAGCTCGAAGAGGCCAA
Seq A exon
GTGAGCTCCAGATACCCCCTTAACCTGACTCTCAGAGAGGAAGGGGCGAGAGGACCTGGGGTGGGGACAGGCAAAGTGGTCATGAGACGGAAGTGGAAGAGACAGGAGGAACTCGGAGGGCAACAGAAGTGCTTGGAAGAAAGCCTGAACTCTTTGCTCTGTGAACTCTGGCTGGCCCTGACCCACTTCCTGTGACGGGCGAGCTTTTGGCCCGGGTTATACCTGATGCTCACGTATAAGACGAGCAAAAAGCTTGTTGGTCAGAGGAGCTACCGTCGATCAGCCTGTGTGGGGGGTGAGGGCAGGGGGCACTGACACCCAGATGCCACTGCAGGTAGGGAGGACGCCTGGGCAGCCCGTGCTGGCGGACTCTGTTCCAGGCATGAGCAGGCTCAGCTCCTGCTAGGCTGGACTTACGGTGTCTCAAGGAGATATAGGGAGGGGGTGGAAGGAGGTCCACCCAAGGCTCCAGTGTTGCCCAGTAGAGTCACACACACACCCTCCACCCTCACCTGGGCAG
Seq C2 exon
AAAGAAGCTGGCCCAGCGGCTGCAGGATGCCGAGGAGGCCGTGGAGGCTGTTAATGCCAAGTGCTCCTCACTGGAGAAGACCAAGCACCGGCTACAGAATGAGATAGAGGACTTGATGGTGGACGTAGAGCGCTCCAATGCTGCTGCTGCAGCCCTGGACAAGAAGCAGAGAAACTTTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197616:ENST00000356287:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.470 A=NA C2=0.274
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.6=100),PF0003816=Filament=PD(23.1=42.4)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATGCACTGCAGTCGG
R:
CTTCTTGTCCAGGGCTGCAG
Band lengths:
347-867
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development