MmuINT0103549 @ mm9
Intron Retention
Gene
ENSMUSG00000040752 | Myh6
Description
myosin, heavy polypeptide 6, cardiac muscle, alpha [Source:MGI Symbol;Acc:MGI:97255]
Coordinates
chr14:55567449-55568371:-
Coord C1 exon
chr14:55568175-55568371
Coord A exon
chr14:55567633-55568174
Coord C2 exon
chr14:55567449-55567632
Length
542 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
ACATACATTCCCCTGGACAGGAA
3' ss Score
6.89
Exon sequences
Seq C1 exon
GCCAAGAACGCCCTGGCCCACGCACTGCAATCATCCCGGCATGACTGTGACCTGCTGAGGGAACAGTATGAAGAAGAAATGGAGGCCAAGGCTGAGCTACAGCGTGTCCTGTCCAAGGCCAACTCAGAGGTGGCCCAGTGGAGGACCAAGTATGAGACGGATGCCATACAGAGGACGGAGGAGCTGGAGGAAGCCAA
Seq A exon
GTGAGTCCACTGTGGCTGCCCCTGGATTTGCCAAGAGAATGGAGCAGAGCGTCTGCTGTGGAGACAGGCAGAGTAGATGCAGGAAAGAGCTTTGGGGTGGGAGAACAGAGGATGGGGAGACCTGGTGAGCCATGGGAGTGTTTGGTAGAAAGCCTGAGTCCTGCAACCTGTAACGCCTGGCTGGCCCTTGCTTACTTCCTTTGACGGGTGAGCTTTTGGCCCGGGTTATACCTGACACTCACGTATAAGACGAGCAAAAAGCTTGTTGGTCAGAGGAGCTATCATCATGCAGCCTGGGCCTGAGGGAAGCGGGTGGGGGTGCACAGTCACACAGATGTGATGTATGTGTGGGAGAGTCTGAGCAGCCTGTGATGGACGTCTCTGTTCTAGGCTCCAGTAGCCCTCACATCCTCTAGGCTGGGGTTCCAACATCTTAGGGAACTGTGGGGAGAAGCTGGGTCTTTCCCATCAACACTCGGAAGGAGGAGATCATCTCACGTCCTTGTGGCTCCAAGTACAGTCACATACATTCCCCTGGACAG
Seq C2 exon
GAAGAAGCTGGCTCAGAGGCTGCAGGATGCAGAGGAGGCAGTGGAGGCCGTCAACGCCAAGTGTTCCTCCCTGGAGAAGACCAAGCACAGGCTGCAGAATGAGATCGAGGACCTGATGGTGGACGTGGAGCGCTCCAATGCCGCCGCCGCAGCCCTGGACAAGAAGCAGAGGAACTTTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040752-Myh6:NM_001164171:29
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.455 A=NA C2=0.274
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.6=100),PF0003816=Filament=PD(25.2=50.0)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.1=100),PF045827=Reo_sigmaC=PU(33.6=77.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCATCCCGGCATGACTGTG
R:
TCCTCTGCTTCTTGTCCAGGG
Band lengths:
342-884
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: