GgaINT0132884 @ galGal4
Intron Retention
Gene
ENSGALG00000013781 | MYH7
Description
Gallus gallus myosin, heavy chain 7, cardiac muscle, beta (MYH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001001302]
Coordinates
chr19:21427-21886:+
Coord C1 exon
chr19:21427-21623
Coord A exon
chr19:21624-21702
Coord C2 exon
chr19:21703-21886
Length
79 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
TCTGTCCATCCATCTGGTAGGAA
3' ss Score
6.7
Exon sequences
Seq C1 exon
GCCAAGAATGCATTGGCCCATGCCCTCCAGTCAGCCCAGCATGACTGTGACCTGCTGCGGGAGCAGTACGAGGAGGAGATGGAGGCCAAGGCTGAGCTCCAGCGCGCTCTCTCCAAGGCGAACTCTGAGGTGGCCCAGTGGAGAACCAAGTATGAGACAGATGCCATCCAACGCACTGAGGAGCTGGAGGAGGCCAA
Seq A exon
GTGAGTCATCTTCCACGGACAGAGGCTCTTCAAGGAGTCCAGAAAGGCCATGTGTGAGTTCTGTCCATCCATCTGGTAG
Seq C2 exon
GAAGAAGCTGGCACAACGGCTTCAAGAAGCTGAGGAGGCTGTGGAGGCAGTCAATGCCAAGTGCTCCTCCTTGGAGAAGACCAAGCACCGGCTGCAGAATGAGATCGAGGACTTGATGGCAGATGTAGAGAGGTCAAATGCAGCAGCTGCTGCTCTGGACAAGAAGCAGCGGAACTTTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013781:ENSGALT00000022380:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.419
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.6=100),PF0003816=Filament=PD(27.5=45.5),PF0003816=Filament=FE(21.5=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.1=100),PF0003816=Filament=FE(20.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGTACGAGGAGGAGATGG
R:
CTCCTCAGCTTCTTGAAGCCG
Band lengths:
173-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]