GgaINT0132884 @ galGal3
Intron Retention
Gene
ENSGALG00000013781 | Q90WH5_CHICK
Description
NA
Coordinates
chr19:16026-16485:+
Coord C1 exon
chr19:16026-16222
Coord A exon
chr19:16223-16301
Coord C2 exon
chr19:16302-16485
Length
79 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
TCTGTCCATCCATCTGGTAGGAA
3' ss Score
6.7
Exon sequences
Seq C1 exon
GCCAAGAATGCATTGGCCCATGCCCTCCAGTCAGCCCAGCATGACTGTGACCTGCTGCGGGAGCAGTACGAGGAGGAGATGGAGGCCAAGGCTGAGCTCCAGCGCGCTCTCTCCAAGGCGAACTCTGAGGTGGCCCAGTGGAGAACCAAGTATGAGACAGATGCCATCCAACGCACTGAGGAGCTGGAGGAGGCCAA
Seq A exon
GTGAGTCATCTTCCACGGACAGAGGCTCTTCAAGGAGTCCAGAAAGGCCATGTGTGAGTTCTGTCCATCCATCTGGTAG
Seq C2 exon
GAAGAAGCTGGCACAACGGCTTCAAGAAGCTGAGGAGGCTGTGGAGGCAGTCAATGCCAAGTGCTCCTCCTTGGAGAAGACCAAGCACCGGCTGCAGAATGAGATCGAGGACTTGATGGCAGATGTAGAGAGGTCAAATGCAGCAGCTGCTGCTCTGGACAAGAAGCAGCGGAACTTTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013781:ENSGALT00000040718:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.518 A=NA C2=0.423
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(19.0=100),PF059116=DUF869=PD(19.0=47.0),PF0205011=FliJ=PD(7.3=9.1),PF0003816=Filament=PD(28.2=47.0),PF0003816=Filament=FE(50.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.1=100),PF0003816=Filament=FE(27.2=100),PF078897=DUF1664=FE(64.2=100),PF045827=Reo_sigmaC=PU(34.5=77.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGTACGAGGAGGAGATGG
R:
CTCCTCAGCTTCTTGAAGCCG
Band lengths:
173-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]