HsaINT0107828 @ hg19
Intron Retention
Gene
ENSG00000197616 | MYH6
Description
myosin, heavy chain 6, cardiac muscle, alpha [Source:HGNC Symbol;Acc:7576]
Coordinates
chr14:23851637-23852529:-
Coord C1 exon
chr14:23852434-23852529
Coord A exon
chr14:23851772-23852433
Coord C2 exon
chr14:23851637-23851771
Length
662 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
TCCCCACTGTCCCACCACAGGAG
3' ss Score
8.87
Exon sequences
Seq C1 exon
ACAGAGGAAGACAAAAAGAACCTGCTGCGGCTACAGGACCTGGTGGACAAGCTGCAACTGAAGGTCAAGGCCTACAAGCGCCAGGCCGAGGAGGCG
Seq A exon
GTGAGTTCAGAGCTTTCTTCCCTTTCTCATCAACACACCTACTATTTGTGAGAACCAATGAATATCTCCTACAGAGGGGCCTGGACAAAGAGTTTGCTATAAACTTTAACTCTCAAACATTTGTTTGACACATCTGGTATGCTCAGAGCTGTCAGGTGTTCTGAATTAACAAAGGCACCACCTACAAGCTGCTTACAATTCAGATACCATAACCCAACAGAAGGCAGTGTAGATGCTAGTGCAGGACGTGGGGCAGCCGAAGCTGAAGGCAGGAAGGTGGCGGTGGAATTGGGCCTAGAAGGGGACCCAGCTAGCCACAGGGCAGTGGGGAAGACATCTGGGTGGATGTGAGTTGCTGATTAGCATGCCTGCACAGGAAGCTGGGGTCCGGGACAGGTGCAGCAAAACAGGATTCTGAAGGGGCCCAGATCGGGCAGCATGGGATTTGTCTGGGGCAGTGGATGGCCGTGAAGGACTCTGAGTGCTGGACATGTTTGAGAAGAGTGCAAGGCAGTTGCAGGATACCCTTGGGAAGGCTGTTGCAGGAATATGCATGAGGTATGGGTGCCTCAGGGACAGGGAGCTGGAACCTCAGGTTGAGAGGCTGAGAATCCCATAGCCCATCTCCAGCTCATTCACCCATCCCCACTGTCCCACCACAG
Seq C2 exon
GAGGAGCAAGCCAACACCAACCTGTCCAAGTTCCGCAAGGTGCAGCATGAGCTGGATGAGGCAGAGGAGCGGGCGGACATCGCTGAGTCCCAGGTCAACAAGCTTCGAGCCAAGAGCCGTGACATTGGTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197616-MYH6:NM_002471:37
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.219 A=NA C2=0.956
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(4.7=88.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGGAAGACAAAAAGAACCTGC
R:
CTTGGCACCAATGTCACGGC
Band lengths:
230-892
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)