GgaINT0127807 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:437921-438582:-
Coord C1 exon
chr18:438487-438582
Coord A exon
chr18:438180-438486
Coord C2 exon
chr18:437921-438179
Length
307 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
AACTCCCTCTCCCTGCACAGGAG
3' ss Score
8.83
Exon sequences
Seq C1 exon
TCTGAGGAAGATCGCAAGAACATTCTTAGACTCCAGGATCTGGTGGACAAACTGCAGATGAAGGTGAAATCCTACAAGAGACAAGCTGAGGAAGCT
Seq A exon
GTAAGTACCATGCTGAGTGGTATCAAGAGTCATTTTCCAAGGGAGAGTCACACATTTGATTATAAGCATGGAAACAGAATTAGGTTCGTGTAAAGTTTAGTGGTCAGATGTGAGGCAAGGTGTTCAACTTTATAGTTGTGTCATGAATAGTTGAGATTGAGGAGGCTTATGTTTAACCACTGATAGAGTGGTGATAAGAATTCTATGCCTTAACCTGGCAAAGACATGATAGACCTCAAGATGGAGGGACTGGAGTACTGAAACTACTTTCTTGGTTTCTCACCACCAACTCCCTCTCCCTGCACAG
Seq C2 exon
GAGGAGCTGTCCAATGTCAATCTCTCCAAATTCCGCAAGATCCAGCATGAGCTGGAGGAAGCCGAGGAGCGGGCTGACATTGCAGAGTCACAGGTCAACAAGCTCCGAGTGAAGAGCCGGGAGTTTCACAGTAAGAAGATAGAAGAAGAGTGAGGAAGTCATGAGGCAGTAAAGTGGCCTGAGGAGTGCACAAAATGTGAACCCTCTGTTGCTTTCTTCTGCATTGTCTTCGTAACCATGTCAATGTCTAGAGAATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023832:ENSGALT00000039878:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.140
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(4.6=78.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCAAGAACATTCTTAGACTCCA
R:
AGACATTGACATGGTTACGAAGACA
Band lengths:
334-641
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]