BtaINT0097075 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018204 | MYH1
Description
Bos taurus myosin, heavy chain 1, skeletal muscle, adult (MYH1), mRNA. [Source:RefSeq mRNA;Acc:NM_174117]
Coordinates
chr19:30110728-30113048:-
Coord C1 exon
chr19:30112953-30113048
Coord A exon
chr19:30110988-30112952
Coord C2 exon
chr19:30110728-30110987
Length
1965 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
GCATTTCCATTTATTCTCAGGAG
3' ss Score
6.64
Exon sequences
Seq C1 exon
ACTGAGGAGGACCGCAAGAACATTCTCAGGCTCCAGGATTTGGTGGATAAACTGCAAGCAAAGGTGAAATCTTACAAGAGACAAGCTGAGGAAGCG
Seq A exon
GTGAGTTCAGTCCCCCTCGGGGTGATGGGGCTGCCTCCTGTTCTCAGATATATCCAAGCCAATTTAGTTCAAGGGGTGAAAGAAATAGGGTAAAATAAGGAAGGATCAATGAAAGATGATTCAATGAATATGTGAAGAATGAACAGAAACCAACCACTTGACAAGATAGTGGAGAGTGTTCTAGGAAGGAGGAACAGCAATGCAAATCTGTTGAGTGGGAAAGAGCCTGGTCTGAGAGGTGGAAAGAATAGGGGAACAGCAATAGAGACCCCCCTGCCCTGGGCAGGGGGTGGGTCATGGGGTCTTCTAGGCAATGATAAGAAGTCTGGTTTTTATTCGAGGTACAGTGAAACACTGGGGAAGCCGCAGCAGGGTTTAAGCTGGTTTGGTCATGCCTTGATTTATATTTTTTAAAAAAGAATTCTGACTACTATTGGAGAATGGATAGTGAGACAACACTACTAGGTACAAGAAGACATTTTAGAAGGGTTTTCAAGTGGTCCAGTGGTTTGTGGAGAAAACAGAAGTAGAGAGATTCAAGATATATTTTGGAGGTCAAAACTAGAAGATATACTAATAGGTTTTGCTTGGAAAGACAGAGAAAGGAAAACAAGGATAATTAATCAGATTTATGATTTGAGTAACTAGGTACATGACATAAATTTACTAAAATGAGAAACTAAGGAAGGAACATATGTAGGCCAAGAAGAAAACAGGAATTCTGTTTTGGAAACATTGTTTGAGATATCATTATATATACACAGTGAAGGTGTCAAGTAAGCCTTTAAATATCAAGTCTCAGAAGGTCTTGGTTATATTCCAACCACTAGATCCTCAGCACTCCGCCTCATCTCATTTCTTCAGCCTGTGAATTATCTGAAAAAATAATAAAAATATGAATTTCCAAGGTATAGAAGTATAAATACATACATACCTAAATATCACAAATTGGTTCCTCTGACCATCTCTGGTTTTGTTTTTCCCCTGATCTAAGGTCTGAGAGAGAGAGAGAGAGAACATTTCTCTGGCTCCTACTCTTTCATTTATAAGAGGACCATCTGGGGTTTTTCTCAAGTTCTATTTTTTAATGACTCAAAGTTTTCTAAACGTTCTAAATTGGAAAGCCTTACTTTGGACAGTTCTTAATGAGCCTTTAAAAAAAGAATGACTACTAGAGACTAAACTAGAACTGGCCTTCCCAAATTTACTGCTATGTGCTCAAATATTCATATAATTCATATAATCAGGGAACACATCGACTGTTTTGGCAAACAACTTCCTGTTTAATTTTTAAACTGCATTAAGTGGCAATAATTTATACTCAAGTGACAATAATAATTTATGGGGCTTCCCTGGTGGCTCAGTGGTAAAGAATCCACCTGCAATGCAGGAGTCACAGGAGATGAAGGTTTGATCCCTGGGTCAGGAAGATCTCTTGGAGAAGGGCATGGCAACCCACTCCAGTATTCTTGTCTGGAGAATCCCATGGACAGAGGAGCCTGGCAGGCTACAGTCCATAGGGTCGCAGAGTTGGACATGACTGAAGTGACTTAGCATGACAATAATTTATAGTCAAGGGTACTAGCTTGGTATAGTACAAATTGTATACATGTATTTTTAAGAGGTCTGGTTCCATTCTCAGAATTCTAGGAGGTAAGGGGAAAGAATAAGAGTCTGGAAAGCTGGCATATTTAGCAGTAGTTCTAAGATGTTTAGATGTTATAAAAAGAGAACTTTTAGTTAGAACAACTTGGAGACAAATGTCACCTGTCCTTCCTTGCTACCCATGACTTCAGAAACATGAGAGAATTTTTTTTTTTTTAATGCAAGAGCATTTCTCTAAGCTAAAACAAGGTGTACTAGAGTGAACTGTTTTTAAGTAATAAGAAATTCAAGACCCGCTGATCTAAGAAACTAGAAATTTTGAAATTTCCCCCTCTTAAATGCATTTCCATTTATTCTCAG
Seq C2 exon
GAGGAACAATCCAATGTCAACCTCTCCAAATTCCGCAAGCTCCAGCACGAGCTGGAAGAGGCTGAGGAACGGGCTGACATTGCCGAGTCCCAGGTCAACAAGCTGCGGGTGAAGAGCCGGGAGGTTCACACAAAAATCATCAGTGAAGAGTAACTCATCCAAATGCTAAAAAGTGACCAAAGAAATGCACAAAATGTGAAAATCTTTGTCACTCTGTTTTGTACTTATGATTTTTGCAGATAAAAAATTTATCAGCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018204:ENSBTAT00000009327:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.320
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(4.7=78.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGAGGACCGCAAGAACAT
R:
AATCATAAGTACAAAACAGAGTGACA
Band lengths:
326-2291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development