DreINT0100065 @ danRer10
Intron Retention
Gene
ENSDARG00000001993 | myhb
Description
myosin, heavy chain b [Source:ZFIN;Acc:ZDB-GENE-081124-1]
Coordinates
chr6:40748373-40748683:-
Coord C1 exon
chr6:40748588-40748683
Coord A exon
chr6:40748505-40748587
Coord C2 exon
chr6:40748373-40748504
Length
83 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
ATAAATGATTTCACTGACAGGAG
3' ss Score
5.29
Exon sequences
Seq C1 exon
ACTGAGGAAGATAAGAAGAATATTATTAGACTGCAAGACCTTGTGGACAAACTTCAACTGAAAGTCAAGGCCTACAAGCGACAGAGTGAAGATGCT
Seq A exon
GTGAGTTACTTTGGGTTTTGATGAGTGTCATGCAACATTATTCTTGATTTGATCAACCTAAACATAAATGATTTCACTGACAG
Seq C2 exon
GAGGAACAAGCCAATACTCACCTGACCAGATTCAGGAAGGTGCAGCATGAGCTGGAGGAGGCTCAGGAGAGAGCTGACATCGCCGAGTCCCAGGTCAACAAGCTCAGAGCTAAAAGCCGTGAATTTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001993:ENSDART00000156295:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.219 A=NA C2=0.773
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(4.6=90.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGCAAGACCTTGTGGACA
R:
TCTGAGCTTGTTGACCTGGGA
Band lengths:
176-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]