MmuINT0103522 @ mm10
Intron Retention
Gene
ENSMUSG00000057003 | Myh4
Description
myosin, heavy polypeptide 4, skeletal muscle [Source:MGI Symbol;Acc:MGI:1339713]
Coordinates
chr11:67259290-67260446:+
Coord C1 exon
chr11:67259290-67259385
Coord A exon
chr11:67259386-67260187
Coord C2 exon
chr11:67260188-67260446
Length
802 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
CAATTTGTTCCCATTCACAGGAG
3' ss Score
8.18
Exon sequences
Seq C1 exon
ACCGAGGAGGACCGCAAGAACGTGCTGAGGCTGCAGGACTTGGTGGACAAACTACAGACTAAAGTGAAAGCCTACAAGAGACAGGCTGAGGAGGCT
Seq A exon
GTGAGTATCTCCGCAGAAGCAGGGAATGGTCAGGGACCACAGCTGGTTCTATGAGGCACTGAAGTCCCCATAATTCAAGGGGCTTTCTTATAAGACAATACTACGCAAACCAGGAGCTCAAAATTAGGGAGGAAAGTGAATATTTATCTGGAAAACCAAACTTTTGCTGCAGATGAGTAGAGCTTTAGACATTCTAATTCATTTCTCTGAGACTGCTTCAAGTGCTGTTTCATTCACGTTAACACAGCAATGCTTTTCTACAGCACCACACTCATTATTTAGAATGTTCCAAACTTCCAGCAATCATAGGGACTATGTTAATAAGGGTCTGGATTCTCCTCAGCCTTATTTAACATTGTGATTAAATCCACTTCCGAACTTAAAAAAAACAAAAAAAAAAAACAAAAAACAAAAACCTTTCTCATTCTGTCAGTTCTCAACTCTCCCTTAAAGCTCTCTGGATCCAATATCACTACTGTGTCTTCTCTTAGAAGTTTGTGTTCTAGAAACAAGATAGAATCAGATCCCTGCTTCTTTGACCTCTGTGTAGTCAATATAGCATTCTCCGTGTGCTAGGAAAAGGCATATGAAAGAGTAAAAATGGGGCAGGGACAGTGTAAGCATATTCATTATGTCATCAAATCCGTGGGCTGTCCTGCCCCCAAATAAGAATGCCACCAAATGACAGAACCTTTCACTTTCTCACTCATGAACCAAACCCTGTAACTTCTTTTAGCAGCAAAGGCAATTAACAGACAGAAAATGTCAAATTTTGTTCTCTCCAATTTGTTCCCATTCACAG
Seq C2 exon
GAGGAACAATCCAATGTCAACCTGGCCAAGTTCCGTAAGATCCAGCACGAGCTGGAGGAAGCCGAGGAGCGGGCTGACATCGCGGAGTCCCAGGTCAACAAGCTGCGGGTGAAGAGCCGAGAGGTTCACACTAAAGTCATAAGCGAAGAATAATCCATCTTTCTGTTGAGAGGTGACAGGAGAAATCACAAAATGTGACGTTCTTTGTCACTGTCCTGTATATCACGGAAATAAATTCTGCAGATAATTTTGCAATCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057003:ENSMUST00000018632:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.280
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(4.7=78.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGGAGGACCGCAAGAA
R:
TTATCTGCAGAATTTATTTCCGTGA
Band lengths:
342-1144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types