MmuINT0103522 @ mm9
Intron Retention
Gene
ENSMUSG00000057003 | Myh4
Description
myosin, heavy polypeptide 4, skeletal muscle [Source:MGI Symbol;Acc:MGI:1339713]
Coordinates
chr11:67072792-67073948:+
Coord C1 exon
chr11:67072792-67072887
Coord A exon
chr11:67072888-67073689
Coord C2 exon
chr11:67073690-67073948
Length
802 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
CAATTTGTTCCCATTCACAGGAG
3' ss Score
8.18
Exon sequences
Seq C1 exon
ACCGAGGAGGACCGCAAGAACGTGCTGAGGCTGCAGGACTTGGTGGACAAACTACAGACTAAAGTGAAAGCCTACAAGAGACAGGCTGAGGAGGCT
Seq A exon
GTGAGTATCTCCGCAGAAGCAGGGAATGGTCAGGGACCACAGCTGGTTCTATGAGGCACTGAAGTCCCCATAATTCAAGGGGCTTTCTTATAAGACAATACTACGCAAACCAGGAGCTCAAAATTAGGGAGGAAAGTGAATATTTATCTGGAAAACCAAACTTTTGCTGCAGATGAGTAGAGCTTTAGACATTCTAATTCATTTCTCTGAGACTGCTTCAAGTGCTGTTTCATTCACGTTAACACAGCAATGCTTTTCTACAGCACCACACTCATTATTTAGAATGTTCCAAACTTCCAGCAATCATAGGGACTATGTTAATAAGGGTCTGGATTCTCCTCAGCCTTATTTAACATTGTGATTAAATCCACTTCCGAACTTAAAAAAAACAAAAAAAAAAAACAAAAAACAAAAACCTTTCTCATTCTGTCAGTTCTCAACTCTCCCTTAAAGCTCTCTGGATCCAATATCACTACTGTGTCTTCTCTTAGAAGTTTGTGTTCTAGAAACAAGATAGAATCAGATCCCTGCTTCTTTGACCTCTGTGTAGTCAATATAGCATTCTCCGTGTGCTAGGAAAAGGCATATGAAAGAGTAAAAATGGGGCAGGGACAGTGTAAGCATATTCATTATGTCATCAAATCCGTGGGCTGTCCTGCCCCCAAATAAGAATGCCACCAAATGACAGAACCTTTCACTTTCTCACTCATGAACCAAACCCTGTAACTTCTTTTAGCAGCAAAGGCAATTAACAGACAGAAAATGTCAAATTTTGTTCTCTCCAATTTGTTCCCATTCACAG
Seq C2 exon
GAGGAACAATCCAATGTCAACCTGGCCAAGTTCCGTAAGATCCAGCACGAGCTGGAGGAAGCCGAGGAGCGGGCTGACATCGCGGAGTCCCAGGTCAACAAGCTGCGGGTGAAGAGCCGAGAGGTTCACACTAAAGTCATAAGCGAAGAATAATCCATCTTTCTGTTGAGAGGTGACAGGAGAAATCACAAAATGTGACGTTCTTTGTCACTGTCCTGTATATCACGGAAATAAATTCTGCAGATAATTTTGCAATCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057003-Myh4:NM_010855:38
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.280
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(4.7=78.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGGAGGACCGCAAGAA
R:
TTATCTGCAGAATTTATTTCCGTGA
Band lengths:
342-1144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: