GgaINT0129378 @ galGal3
Intron Retention
Gene
ENSGALG00000023867 | MYH1
Description
NA
Coordinates
chr18:384589-385486:-
Coord C1 exon
chr18:385391-385486
Coord A exon
chr18:384860-385390
Coord C2 exon
chr18:384589-384859
Length
531 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
TACTCCCTTTCCCCACACAGGAG
3' ss Score
8.47
Exon sequences
Seq C1 exon
TCTGAAGAAGACCGGAAGAATGTTCTCAGGCTCCAGGACCTGGTGGACAAGCTGCAGATGAAGGTGAAATCCTACAAGAGGCAAGCTGAGGAGGCT
Seq A exon
GTAAGTGTCATTCTGAAATGGGCCAAAATCTCTTCTGGTTTGTTTTGGTGCTTTTTTTCTGTGCAGCTTGTGTTATTTTGACTTTTTAAATGCTTTTGCAAGACTAGGCAGTGAAAAATATAAGATTGAGAACTGTTGCTTTGGGGACGGACTACACTGCCTCATCTCTAGTGTTGCTCTAAGTGTCAGTTTCCCGCTCTATCTCTCAATTTCTGTCCTCCCCTGTCTATTAGGAGCTGCTGTCAAACCATCTCCTGTCATGGACTTTGTTGGGACTGTGCTATGTGTAAAATGGTCTTGGCCTTTCCGATACCCTGATGTTCTTTTCTCTTCTGGAAAACATATTGCACAGCTTCTTTCCTTGTCATTTTTTGGAAGTTGGCCCTGCATGTCCAGTATTTGGATTTTTCTCTGAGCTGTTATTAATACTGAACTGTTTCTAAAAAAATTAAATATTTTGGAATAGATCCACTCATTAGGCACTCTGACACCATTAGCATGCTGTTTTCATTACTCCCTTTCCCCACACAG
Seq C2 exon
GAGGAGCTGTCCAATGTCAACCTTTCCAAATTCCGCAAGATCCAGCACGAGCTGGAGGAAGCCGAGGAGCGGGCTGACATTGCAGAGTCACAGGTCAACAAGCTCCGAGTGAAGAGTCGTGAGTTTCATAAGAAGATAGAAGAGGAGGAATAAGGCTCACAAGGCTAAAGTGTGACCTGAGGCATGCATAAAATGTGAACCTCTGTGTTGCTTTTTTATGTCATTGTCATCTATGTCTAGGTAATAAAGAGAGTAGAGACCTTTGCATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023867:ENSGALT00000001420:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.120
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(4.7=78.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTCTCAGGCTCCAGGACC
R:
ATGCAAAGGTCTCTACTCTCTTT
Band lengths:
345-876
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]