BtaINT0097301 @ bosTau6
Intron Retention
Gene
ENSBTAG00000037794 | MYH4
Description
myosin, heavy chain 4, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:7574]
Coordinates
chr19:30080604-30082136:-
Coord C1 exon
chr19:30082041-30082136
Coord A exon
chr19:30080757-30082040
Coord C2 exon
chr19:30080604-30080756
Length
1284 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
AAATGCATTTCTTTTCTCAGGAG
3' ss Score
6.78
Exon sequences
Seq C1 exon
ACTGAGGAGGACCGCAAGAATGTTCTCAGGCTGCAGGACTTGGTGGACAAGTTACAAAGCAAAGTCAAGGCCTACAAGAGACAAGCTGAAGAGGCT
Seq A exon
GTGAGTACCTCTACAGCGAGAGAAAAAGGTTCAGGAGCAGGGCCAGGTTTTGTGGAGACAAAAGGTCAAAGAATTTAAGAGGCTTTTTTTAAAGGCAAAGAACACAGAATTGGGAATATGAAAGTGGGTTTGAAAAATGAATATTTAGAAGGAAAAAAACCATAACACTAATTACCAGAGCCTTGGAGGTTCAGGTTCATTTCTTCTGACGTCTCCTTAAGTACTTTTCCAGACATGGTAGTATAGAAATGTTTCTTGGTTGTAACTCACTTCCCTCCCTATTTAAAACACTCAGCAACAACGAGTACTCGCAGAGGTGTGCAAATGAGGGCTCTGAATCTAAGCCTTATTTAAGTTTATGATGAATCCACCTCAGAACATTTCTTTTTCATTTGGTTGCAGTTCTCTTTCTCATGGGCTTCCCAGGTGGCTCAGTAGTAAAGAAACCACCTGCCAATGCAGGAGACTCTGGTTCAATCCCTGGGTCAGAAAGATCCCCTGGAAAAGGAAATGGCAACTTACTCCAGTATTCTTGCCTGGGAAATCCCATGGACAGAGGAGCCCGGTGGGCTACAGTCCATGGGGTCACAAAGAGTCGGACACAACTTAGCGACTGAGCACTTAATGCACACTTTCTCATACTATTAATTCTAAAATCCTTCCTTAAGGTTCTCTGCATCCAATACTACCACGGTACCCTGCTGCTAAGTCGCCTCAGTCGTGTCCAACTCTGTGCGACCCATAGACGGCAGCCCACCAGGCTCTGCTGTCCCTGGGATTCTCCAGGCGAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCATGAAAGTGAAAAGTGAAAGTGAAGTCACTCAGTCGTGTCCGACTCTTAGCGACCCCAGGGACTGCAGCCTACCAGGCTCCTCTGTCCATGGGATTTTCCAAGCAAGAGTACTGGAGTGAGTTGCCATTGCCTTCTCCACCTACTTTTAAGAATTTGTTTTACAGAAACAAGGTTGATTCAAATTCCTGCTACTTTGATCTCCCTGTTGTCACTGTAGCATCTTAAGTTTGCCAAGAAGAGAGTTAAATAAGAGATAATGAACAGGGATTTGTAAGCCCAAACAACACAGGGGCGAATGTGTGGGATGCCCTGTCCCAAACAGGTATATTACCAAAGATCAGAACCTTCTGCTTCTTACTTATGAAGCAAATCCTGTAGCTGCTCCTAGTAAGAAAGGCAGTAAGAATCAGGAAATGTCACATTTTCTTGTTCTCTCAAATGCATTTCTTTTCTCAG
Seq C2 exon
GAGGAACAATCCAATGTCAATCTTGCCAAATTCCGCAAACTCCAGCACGAGCTGGAGGAGGCTGAGGAACGGGCTGACATTGCCGAGTCCCAGGTCAACAAGCTGCGGGTGAAGAGCCGGGAGGTTCACACAAAAGTCATAAGTGAAGAGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037794:ENSBTAT00000061014:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.420
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(4.7=78.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAGGAGGACCGCAAGAAT
R:
ACTCTTCACTTATGACTTTTGTGTGA
Band lengths:
247-1531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development