MmuINT0103206 @ mm10
Intron Retention
Gene
ENSMUSG00000056328 | Myh1
Description
myosin, heavy polypeptide 1, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339711]
Coordinates
chr11:67222371-67224575:+
Coord C1 exon
chr11:67222371-67222466
Coord A exon
chr11:67222467-67224316
Coord C2 exon
chr11:67224317-67224575
Length
1850 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGA
5' ss Score
7.4
3' ss Seq
AAATGCATTCTTACTCACAGGAG
3' ss Score
5.87
Exon sequences
Seq C1 exon
ACTGAGGAAGACCGCAAGAATGTTCTCAGGCTCCAGGACCTTGTGGACAAACTGCAATCAAAGGTCAAGGCCTACAAGAGACAAGCTGAGGAAGCG
Seq A exon
GTGAGATCAAAACCCCTGACATGATTGGGTGGTCAGCAGAAAAAACCAAACCAAACCCAAAAAGATGAGCAAGACAAGGAAGGATCCATCAGAGGATCTAGTGAGGGTCTAAGAATGTCGTGCAACTGGCCATTCTGAAACAAGCCAGAGAGAAATGTACTAGTGAGAATAAGGATGGGGGTGTAGCTCAGTGGAAGAATGTGGGTAGGCTTGGCATCTCTGAGGCCCTGAGTCCAGTTGTAAGCATTAACCCAACCAACCAAAGCATAGTCCCTATCATGTTCTAGAGAGGGGGAGGAGGAATGTACAGAGTCTTGTCATTGAATCAGCAAGACTGAGGAAGAGAACAGTGTACCTGGGGCCAGAGAACCGGGCAGAAAGTAGCTCACAAGGTCTTCTGGGCCCTGGAAAGAAGCCTGCATCATAATACAAATGCAATCAGGCCACAGAATCAAGGGAAAGATCCCCTTCCAGGACAGATGTGGCCTGCTTTTTATTTTTAAGGGTCCTTACTACAGTGTAGAGAAAAGATTGTTGGATAACCCAAGTAGGTGCAGAAATGTGTGTTTTCAGGTAGGTGTGTGGCTTGTATTAAGGCAGAAATAAAACAAGGAGAATTGATGAGTTTCAGGATTCATCCTGGAGAGGGAAGGCATTAGGCTTGCCAGTAGGCTGGCCCTGGAAGTAAAAAGAAACAAAGCAGGCATAATCCACCAAGTTGTGGTGTGAGTAGCCAGGTGGGGGAAGTAAGATATAACTGAAATGGAAATAAAGGGGACCAGATGTTCCAGATGAAAAGGAAATAGGAATTCTACTTTCATTCCATCGCAAGTTATTGTTACATACACACTAAAGAGATCCAGGGTGAAGCTGAAGTGTCATGCATACTATGGAGGGCAGAAGGTTCAGTAGTGCTCTGACTGCAGCTTGACGCCGTCACATTTCCTCTTCTCTGACTCATCCTAAGGAGTCAAGTATCACTTGTGTCTCTGTGGAGACATATACCTGTACATTGCAGATAAAGTCCTCTGTCCACTGGTGGCTTTTGTTTACCTCCTGAGCTCTTAGCTCTGAGAGGAAGAGAAAGATGAGGAAGAGAGCAAAGGAAGAAGCGAGAACAGACACATACACGCGCGCACCTCGCACCCACAGCCTGGCAAACCACGCACCTTCCCTCCACTCCAGCTCTTGCTTTCTTCTACTGTGAAAGGAAGATGCAACGGCTTTCCCGAGCCACCCCATTTAAAGTCATTTTAAGCTTCGTAAATGTTCTAAATCTGAATGTCATATTTTGCGAAGGTTCTTAATGAGACACTAAAAAAAAAAAAAAGAATAATTACTGGAGACTAAATTAAAACTGGCCTTTCAAAATTCATTACTGTATCTTCAAGCATAATCAAAGACAACTTGGATTATTTTAGAGAATAATAAACATGTTTAATTTCTAAACTTTATTAAGTGGGGGATAATTTATGACCCAAGTGGCAATAATTTATATTCAGTTTGGTGTCACAGGGATTGCTTGTGTGAGTCTCATTCATCCTCTGGAGCCTCATCAGGAGCAATGACAACAGATCCTGGGAACCTGGCACAATCATAGTAGTGTTAGCTTTTCTGAAAGAAAAATTGTTCTTTTCTTTAAGACAGACAATGTCATCTGTGTTTACCAATGACTGCATGAAGTATATGCGGAGTTAATAGAACCAAAAAAAATGTACACACTTGTCTACACTTCTTTGAACATTTATTAGAGTGGATTGGTTTTAAGCAAAAAAGACAGCCAAGATGCACTGACCCTAAAGTCTAGAAATGTGAGCATTTCTTCCTTACAAATGCATTCTTACTCACAG
Seq C2 exon
GAGGAACAATCCAATGTCAACCTGGCCAAATTCCGCAAGATCCAGCACGAGCTGGAGGAAGCCGAGGAGCGGGCTGACATCGCGGAGTCCCAGGTCAACAAGCTGCGGGTGAAGAGCCGGGAGGTTCACACCAAAATCATAAGCGAAGAGTGATTGATCCAAGTGCAGGAAAGTGACCAAAGAGATGAGCAAAATGTGAAGATCTTTGTCACTCTGTTTTGTACTCATAACTTTGGGAGATAAAAAATTTATCTGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056328:ENSMUST00000124516:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.180
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(4.7=78.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGAAGACCGCAAGAATGT
R:
TCTCCCAAAGTTATGAGTACAAAACA
Band lengths:
334-2184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types