MmuINT0103558 @ mm9
Intron Retention
Gene
ENSMUSG00000040752 | Myh6
Description
myosin, heavy polypeptide 6, cardiac muscle, alpha [Source:MGI Symbol;Acc:MGI:97255]
Coordinates
chr14:55561190-55562080:-
Coord C1 exon
chr14:55561985-55562080
Coord A exon
chr14:55561325-55561984
Coord C2 exon
chr14:55561190-55561324
Length
660 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
CCCCCTTTACCGGCTCATAGGAG
3' ss Score
6.9
Exon sequences
Seq C1 exon
ACAGAGGAAGACAAGAAGAACTTAATGCGGCTGCAGGACCTGGTGGACAAGCTACAGTTGAAGGTGAAGGCCTACAAGCGCCAGGCTGAGGAGGCG
Seq A exon
GTGAGTTCAGAGTTTCGTCTCCGTCTTTTATCCGCACACCTGCTAGTGAGAACCAGTGAGCATTTGCCACAGTGGGGCTGAGACCAGAGTCTGCTCCAACCATCAGCTCAGACATTTATTCTTCAAGTATGATCAGAATTGTATCTAGCACCCTAAGGTCCAAAGATCAGTGCTGTTCCTGCCCTACATCTGTCCACTAGTTAATTACAGTCCATATACCATAAGACTAAGGAAGAGCATTGAGATGCAGGACAGCAAGGGGCCAAGAGTTGGCGTTGAGCCTGGATAGGAACCCAGGGTAAAAGAAGACACTTGGGTGGACAGGAACATGTGGGTGTGGTGTGGATGAGCCCAGATGTGCAGAAAACCCCCAAGTCTGCAGGCATCTGTCTGAGGCACAACTGGAATAGATGCAGTGGATGTGGATTCTCAGAGCACGCAGGGCAGCACAGGTTCATTCCGGGCAGTGGGTAGCGATGACGGGTCTTGAACACTGAGCACGTTTGAGGAGAGTGCCAAACAGGACATCCCTGGGAAGGCTGTTGCAGAAACTGAGTGAGGAGTGGCTGAGGGACATGGACCAGGAGAACCTGAGAGCCCATCCCAGAGTTCTCCTCACCCGAGTCTCCCCTCCCCTTTACCCCCTTTACCGGCTCATAG
Seq C2 exon
GAGGAGCAGGCCAACACCAACCTGTCCAAGTTCCGCAAGGTGCAGCACGAGCTGGATGAGGCGGAGGAGAGGGCGGACATCGCCGAGTCCCAGGTCAACAAGCTGCGGGCCAAGAGCCGGGACATTGGTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040752-Myh6:NM_001164171:37
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=NA C2=0.956
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(4.7=88.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGGAAGACAAGAAGAACTT
R:
CTTGGCACCAATGTCCCGG
Band lengths:
231-891
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: