HsaINT0107838 @ hg38
Intron Retention
Gene
ENSG00000092054 | MYH7
Description
myosin heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:7577]
Coordinates
chr14:23429775-23430663:-
Coord C1 exon
chr14:23430560-23430663
Coord A exon
chr14:23429914-23430559
Coord C2 exon
chr14:23429775-23429913
Length
646 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
AATATGGGGCCTCCCTACAGAAC
3' ss Score
6.55
Exon sequences
Seq C1 exon
ACATGCTGCTGATCACCAACAACCCCTACGATTATGCATTCATCTCCCAAGGAGAGACCACCGTGGCCTCCATTGATGACGCTGAGGAGCTCATGGCCACTGAT
Seq A exon
GTGAGTGTGTGAGGACCCAGCCAGGGGGTGGGAGGATTGGCAGTGAGGGGCAAACAGGGGTCCAAAAGCAGAGCTAAGACGCTGGCCATTGGTTGTTTAAAGTGGTATGGACCTCCTGAGAGCCAGAATGTGCCCTGTGATCAGGGTGTACTGGGGAATGGATGAGGTGAGACAGGACTGGCCAGTATCTGGTGTTCTATCAAACCAGGAAGAGCTGAAAGCCATGAGACAGAGAGACACACAAGCCAAGAAACAAGCATCACCGAGGGAGCAGGACGAGGAGGGAAGGCCATGCAGACGGCATGGGGCTGGAGGGGCTGTTAGGTGAACAGATGCAGACAGGTATGGAAGGCCAGGCAGGAAGCAAGTGTAGGGCCAGGAAGCATAAGTGGGTAACTCAGAAAAGCTGTGGCCACTGACACTGGGGCTGCGGCCAACTGACGTCTGCTCTGCTCTTGCATCTTACATCCTTTGTTTTGGAGTTCCCTGCATCTTACATCCTTTGTTTTGGAGCTCCCCACTGGGTATGGGAGTCTCAGAACCCACAGGGATTAAGGAGACAAGTTTTCTCTCCAACTTACAAGGGATCTCACTTACCCATCATACTTCTTTTTCTGGGGTCCGCCAATATGGGGCCTCCCTACAG
Seq C2 exon
AACGCTTTTGATGTGCTGGGCTTCACTTCAGAGGAGAAAAACTCCATGTATAAGCTGACAGGCGCCATCATGCACTTTGGAAACATGAAGTTCAAGCTGAAGCAGCGGGAGGAGCAGGCGGAGCCAGACGGCACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000092054:ENST00000355349:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.255
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCTGATCACCAACAACC
R:
GCTCCTCCCGCTGCTTCA
Band lengths:
216-862
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development