MmuINT0103569 @ mm10
Intron Retention
Gene
ENSMUSG00000053093 | Myh7
Description
myosin, heavy polypeptide 7, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:2155600]
Coordinates
chr14:54989255-54990081:-
Coord C1 exon
chr14:54989978-54990081
Coord A exon
chr14:54989394-54989977
Coord C2 exon
chr14:54989255-54989393
Length
584 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
GATATGGGGGCTGCTTCCAGAGC
3' ss Score
2.27
Exon sequences
Seq C1 exon
ACATGCTGCTGATCACCAACAACCCCTACGATTATGCGTTCATCTCCCAAGGAGAGACGACTGTGGCCTCCATTGATGACTCTGAAGAGCTCATGGCCACGGAT
Seq A exon
GTAAGTATGCGAGTTCTCAGCTACGGGCAGACACTTGGTCGTGGCACATGGTACCAGCTTAGGAACAGAGCCAAGATACTGGCTATCTGATTTTTAAAGTGGTACAACCCTCCTGGAGATCTACCCCGTGAACAGGGTATGCTAAGACACGTGCTATGAAGCCAATATTTGGTGTTGTCAAATCACAGTGTGCTGAGAACCATGGACAGAGACAGGAAAGAAACAAAACCACACTACTAGGGATACAGGAAGGAGAGCCCTGCAGACCCTGGGGGCTGAAGTGAGCTGTTGGGTAGAGGAGAGATACACACGGGTACCAAAACCTAGGCAGGGAAAGATATAGGAACATAGGCGGGTAGCCCACAGCAGCTACAGAGAACAGCTATGAGCATTCACAGTGGATGGTGATAAGGCCCTGATCTTTAATGTCTGTCTGTGTTTTGGAGTCTCTCTCTGCTTGTGGGAATCTCATACTTTACAGGGGATAGGAAAACAAATTCAGGTTCTCTCTCCAGTGTATGCGGGTCTCATTAACTGGTCACACTTCCTTTTCTGGGCTTCACTGATATGGGGGCTGCTTCCAG
Seq C2 exon
AGCGCCTTTGACGTGCTGGGCTTCACTCCAGAAGAGAAGAACTCCATTTACAAGCTGACAGGCGCCATCATGCACTTTGGAAACATGAAGTTCAAGCAGAAGCAGCGGGAGGAGCAGGCGGAACCAGACGGCACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053093:ENSMUST00000102803:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.298
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCTGATCACCAACAACC
R:
CTTCAGTGCCGTCTGGTTCC
Band lengths:
240-824
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types