RnoINT0096547 @ rn6
Intron Retention
Gene
ENSRNOG00000016983 | Myh7
Description
myosin heavy chain 7 [Source:RGD Symbol;Acc:62030]
Coordinates
chr15:33652690-33653479:-
Coord C1 exon
chr15:33653376-33653479
Coord A exon
chr15:33652829-33653375
Coord C2 exon
chr15:33652690-33652828
Length
547 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
GATATGGGGGCTGCTTACAGAGC
3' ss Score
2
Exon sequences
Seq C1 exon
ACATGCTGCTGATCACCAACAACCCCTACGATTATGCGTTCATCTCCCAGGGAGAGACGACTGTGGCCTCAATAGATGACTCTGAAGAGCTCATGGCCACCGAT
Seq A exon
GTAAGTTTGTGAGCACTCAGCCACGAGGTGTTGTACAACCCTCCTAGAGAGCTAGAACACACCCTGTGAACAGGGTACGCTAAGACACATGCTATGAAGCAGGAGAGTAGCTACTATTTGGTGTTGTCAAACCACGGTGTGCAGAGAACCATGGGCAGAGAGACAGGAAAGGCAGACAACAATATCAACACCACTCGAGAAACAGGAAGGAGAGCCCTGCAGATCCTGAGGGCCGAAGTGAGCTGTTGGGTAGAGGAGAGATACACACGGATATGAAAATCGAGGCAGGGAAGGGCTGGGAACATTGGTGGGGAGCGCACAGCAGCTACGGAGAACAGCCATGACCACGGACAGTGGATGGTCACGAGGCGGGGCCCCAATCTTCTATTGTCTGTCTTTGTTTCGGAGTCCCTCTCTGCTTGTGGGAATCTCATACTTTACAGGGAGGAGGAAGACAAATTCAAGTTCTCTCTACCAGCGTATGAGGGTCTCATTAACTGGTCACACTTTCTTTTCTGGGATTCACTGATATGGGGGCTGCTTACAG
Seq C2 exon
AGCGCCTTTGATGTGCTGGGCTTCACTCCAGAAGAGAAGAACTCCATTTACAAGCTGACAGGCGCCATCATGCACTTTGGAAACATGAAGTTCAAACAGAAGCAGAGGGAGGAGCAGGCAGAGCCAGACGGCACGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016983:ENSRNOT00000024186:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.298
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGCTGCTGATCACCAACA
R:
CCTGCTCCTCCCTCTGCTTC
Band lengths:
222-769
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]