GgaINT0127777 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:450791-451115:-
Coord C1 exon
chr18:451012-451115
Coord A exon
chr18:450930-451011
Coord C2 exon
chr18:450791-450929
Length
82 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
TTCACCGAATCTGTTGCCAGAGT
3' ss Score
4.42
Exon sequences
Seq C1 exon
ACATGCTCCTCATTACTACCAACCCCTATGACTACCAGTTTGTGAGTCAAGGCGAGATCACTGTTCCCAGCATTAATGACCAGGAGGAGCTTATGGCTACAGAT
Seq A exon
GTAAGTTACGCATATAAATTTTGATACATTTATTAATACACTTAATATATGTGGCATTTACATTCACCGAATCTGTTGCCAG
Seq C2 exon
AGTGCCATTGATATCCTGGGCTTCACTCCTGATGAAAAAACAGCCATTTACAAGCTGACAGGGGCTGTCATGCACTATGGGAACTTGAAGTTCAAACAGAAACAGCGAGAGGAGCAGGCAGAGCCAGATGGCACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023832:ENSGALT00000039878:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.234
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGCGAGATCACTGTTCCC
R:
CTGCTCCTCTCGCTGTTTCTG
Band lengths:
174-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]