DreINT0100035 @ danRer10
Intron Retention
Gene
ENSDARG00000001993 | myhb
Description
myosin, heavy chain b [Source:ZFIN;Acc:ZDB-GENE-081124-1]
Coordinates
chr6:40755972-40756344:-
Coord C1 exon
chr6:40756241-40756344
Coord A exon
chr6:40756111-40756240
Coord C2 exon
chr6:40755972-40756110
Length
130 bp
Sequences
Splice sites
5' ss Seq
GATGTAGGT
5' ss Score
4.9
3' ss Seq
TGATTGTTTTTGACTTGCAGACA
3' ss Score
9.1
Exon sequences
Seq C1 exon
AGGCTCTTCTGATCACCACTAACCCATACGACTATCCCATGATCAGTCAGGGTGAGATCACAGTCAAGAGCATCAACGATGTGGAAGAGTTCATTGCAACTGAT
Seq A exon
GTAGGTGGAGATCAAATGTTTCAGCAGTTAATATCTGATGCATAATAACATGGATGTATACTCTGCATACCTGATATACTGTATTAAATACGTTATCCAATAGGCACACTTGATTGTTTTTGACTTGCAG
Seq C2 exon
ACAGCCATTGATATTCTGGGCTTCAATGCTGAAGAGAAGGTAGGCATCTACAAGCTGACAGGAGCTGTGATGCATCATGGGAACATGAAGTTCAAGCAGAAGCAGAGGGAGGAGCAGGCTGAGCCTGATGGAACTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001993:ENSDART00000156295:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.255
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCTTCTGATCACCACTAACC
R:
CCTCAGTTCCATCAGGCTCAG
Band lengths:
242-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]