MmuINT0103176 @ mm9
Intron Retention
Gene
ENSMUSG00000056328 | Myh1
Description
myosin, heavy polypeptide 1, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339711]
Coordinates
chr11:67019191-67019553:+
Coord C1 exon
chr11:67019191-67019294
Coord A exon
chr11:67019295-67019414
Coord C2 exon
chr11:67019415-67019553
Length
120 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
CCTCTTCTGTCTCCTCACAGAGT
3' ss Score
12.34
Exon sequences
Seq C1 exon
AAATGCTCCTGATCACCACCAACCCATACGACTACGCCTTTGTCAGTCAGGGGGAGATCACGGTGCCCAGCATTGATGACCAAGAAGAGTTGATGGCCACAGAT
Seq A exon
GTAAGTCATGTTTTATGAATGAGTACATGCTAGCAAAAGCCTAGTTAGGGCAAACTACAAATCCTGCCAAGTGAGCAGTGTCTTCTGCCCTTACATTTATCCTCTTCTGTCTCCTCACAG
Seq C2 exon
AGTGCCATTGATATTCTGGGCTTCACTTCTGATGAAAGAGTCTCCATCTATAAGCTCACAGGGGCTGTGATGCATTATGGGAACATGAAATTCAAGCAGAAGCAACGAGAGGAGCAGGCTGAGCCAGACGGCACCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056328-Myh1:NM_030679:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.277
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCTCCTGATCACCACCAAC
R:
CTCAGCCTGCTCCTCTCGTT
Band lengths:
226-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: