HsaINT0107847 @ hg38
Intron Retention
Gene
ENSG00000092054 | MYH7
Description
myosin heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:7577]
Coordinates
chr14:23433532-23434249:-
Coord C1 exon
chr14:23434194-23434249
Coord A exon
chr14:23433741-23434193
Coord C2 exon
chr14:23433532-23433740
Length
453 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CCAGCTTCTGCTCACTCCAGGCA
3' ss Score
6.28
Exon sequences
Seq C1 exon
GTCCCCTGCAGGCCTTGGCCCCTTTCCTCATCTGTAGACACACTTGAGTAGCCCAG
Seq A exon
GTAAGAAAAGCTGAAGCTAGAGTGTTGAAAATCTAGTAAGACTGGGCATTAGAGCCCCAAAGCCAGCCTATGGAACTCTAGTTTCTGCCATGTGCTGGAGAGAATATCTTGGCTATCAAGAGCTACTTACCTGTGACCAGGGGGTCCAGGGATAGATGAGGGTCAGAGATGGAAATAGTTAGATTTCTGCTCCTACAGGGAGCTCAGAATGCTCTTCCTTCCCCTAGGAGAGCCCCAGCTTGAACAATAGTTAGTTGTTCCTTTTACCCTGGCAGGTTTGCTAGGCTGCTCCTCTGGTTAAGGGGTAACCTCAAAGAGGAAGGGACTCACTGGTAACTCCTCTTGACTCTTGAGCATGGTGCTAGGTTTTGGGGCTCCCACTGAAGGGGAGAGCCCAGGGAGGGAAGGGAAGAATGGGCAGATGGGAGGGCAGCCAGCTTCTGCTCACTCCAG
Seq C2 exon
GCACAGCCATGGGAGATTCGGAGATGGCAGTCTTTGGGGCTGCCGCCCCCTACCTGCGCAAGTCAGAGAAGGAGCGGCTAGAAGCGCAGACCAGGCCTTTTGACCTCAAGAAGGATGTCTTCGTGCCTGATGACAAACAGGAGTTTGTCAAGGCCAAGATCGTGTCTCGAGAGGGTGGCAAAGTCACTGCCGAGACCGAGTATGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000092054:ENST00000355349:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.060
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0273614=Myosin_N=PU(78.6=49.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCCTGCAGGCCTTGG
R:
CTTGCCATACTCGGTCTCGG
Band lengths:
265-718
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development