GgaINT0128357 @ galGal3
Intron Retention
Gene
ENSGALG00000023800 | Q90900_CHICK
Description
NA
Coordinates
chr18:499137-500562:-
Coord C1 exon
chr18:500515-500562
Coord A exon
chr18:499380-500514
Coord C2 exon
chr18:499137-499379
Length
1135 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
ACATTTTTTGTCCCCATTAGAGT
3' ss Score
7.64
Exon sequences
Seq C1 exon
CATTGACCAGCTGCCAGGCTGCAAGTCACCCATCTGGTGTCACAAGAG
Seq A exon
GTAAGAACCTGATTTATTCATGCTTTTGGGTGGGATTTCTGGATGGATGAACAATCACCTTTTTCACCCTGCATTCAAAGCTGGTGTGATTACAGTAGGCAGGTGGTGGGGTGCTCATGGCTGGCAAGGTTTTCAAATGGCTGTGTTTGTATCTCCCTGCCTCCAATGGCAGACGAGGAAATTCCCATTGGAATGCTCTTCATTTCTGCTTAACTGACCAAACAGGGAGTGAGGTGTGCTGGCTTCACATCATTGCAGCAGTAGATCTGGACCAAGATGAACAAAGAAGGAAAAAGTGCAAAATTGCATATTCTTCCTCAAAACATTATCAATAAATCATCTGAGAATACAGACCTTATTACCATCTTCATAAAATGTCAAAGCCCTCTTAGATATGCATTTAATTAAAAAATAATTCATTTAATAAAATAAAAAAAAGTTATCTGTTGAACAGAAGGAATCAATTTTACTAATGCATCTAGAGAATTTTCAAGTGCAGCTGGCAAAACTTAGCATCAGAACAAAGCATCTAAAAAAGCACTCTTATTATATTAAAGTTTTGAGAGCTCACCTGTTCCTGGATTTTTTTCAAAAAGTATTTATTTGGGAGCCCCATACAGGCATGGCAATTACAAATTCGGTGCTTGAATTTTGTTTGAGATTATTCAGATATTGTGCTTATGAATAGCAACTGTATAAACAAATTAAATTTTGGCAGAGTATTAAAGGCCAAATAACCTGTCCTTTTCCTGTACTACAGTTTTTCAGAAATGATCCTCCACTTTTCATCCTTCTATCAAAATGTTCCACATGTATTTCCACTAGTAATTACGTCTCATTGAAACTTGCTCAGCAACTTCACTCTCATCTCACAGACACACTGTTCTTAAAGATCCAAAACTGCAGTTGTGAAAGGTTGTTCTTGTAGAAGTCGGAAGATCTAGACTACATCAGTTATAACCCCATGTTGTCTGAATCAACCTACAGATTAGGATTTCAGTTAGATCATTTTAGTTGTCTTAAATATTGGAGTGTGAAGAAAAACCATATGACATGGTGAAAGACATGGAATATAGAAGTTTTCCTAGTCTTACAGAAAAGATATGAATAGTGTTACATTTTTTGTCCCCATTAG
Seq C2 exon
AGTCTTCTGCTGAGGTGTCTTCAGTGAAGAGCAGCCATGGCTTCTCCAGATGCTGAAATGGCCGCCTTTGGGGAGGCTGCTCCTTATCTTCGAAAGTCAGAGAAGGAACGAATCGAGGCCCAGAACAAGCCTTTTGATGCCAAGTCATCAGTCTTTGTGGTGCATCCCAAAGAATCTTTTGTGAAAGGGACTATCCAGAGCAAAGAAACAGGGAAGGTCACTGTCAAGACTGAAGGTGGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023800:ENSGALT00000001427:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.232
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0273614=Myosin_N=PU(78.6=47.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGACCAGCTGCCAGGC
R:
CACCTTCAGTCTTGACAGTGACC
Band lengths:
286-1421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]