BtaINT0097268 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007090 | MYH2
Description
Bos taurus myosin, heavy chain 2, skeletal muscle, adult (MYH2), mRNA. [Source:RefSeq mRNA;Acc:NM_001166227]
Coordinates
chr19:30163110-30164822:-
Coord C1 exon
chr19:30164780-30164822
Coord A exon
chr19:30163334-30164779
Coord C2 exon
chr19:30163110-30163333
Length
1446 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
AAATGCTTCATCGCCTTTAGGAC
3' ss Score
7.35
Exon sequences
Seq C1 exon
AACCGTCTCACTTCCAGGCTGCGTCTTCTCACTTGGTAACAAG
Seq A exon
GTAAGATTTGGACTAACCAGTCCCTGGAGAAGGCAAGAGCCTCTGGGATGGATGTGTGTCACTTAGCAACCTTTGAGAAAGTGCTTGTCTCAGTAAATACCTAACAACTGTATTTCAGGAAAGATGCAGGAGAGGGAGAAGGGGACGGAGAGCTTGCCTTTTAGAACAAGGCACATAGTCTTAGGACTCTGGCACTGGTGGGATGACATTTTAGCAAGGAAAAGTTTGTGAAAAGAATATCATTTCCGTAGGGGAAAAAAACATCTGCACTAAGATTCCCTGGTTAAAAATCTCAACTTTGTAAAAATGTGTCCTGCTTTTAGAATTCATTTAGCAAACACGATATCTAACAAGTAAGAAAAGAAGAACCTAGGAAAGCGGGCTGCTTTTACTTCTGTGAAGAGTTTTAAAAAGTCACCTTACCCAATGCTAGGTGTTATATGAAACCAGAACACTGAAATTTTTGTTACATAAATAATGAAGGTATTAGTCTGCCCACTACTACACACTGCATTTCTAAAGAGAGAGGCTGGTGGGTAGATGATTAAAGTGAGTTTCAAGTAACTCGATCACTTAATGACTGAAGTAGCATCCTCTGCCAAGCCTTTCATTCTACTGATGTCGCCGGTGATCTGCAGACAACACTGAATGGAACAGCCTGAGCCTGTGCCTTCGGAAGGAGATGTGGAACAGGAAAGTGAGCCTTCAGTGCAGAAGAATGAGGATAATGTTTGCTTTTATCCTCAATTAGTTTAACTGGGTTAAGCTGATTAACTGGATTTAATATGCAAAGAAATTATGCTAGAGAAATTCTACTAAGCACCTAACTCAAAAAAAAAAAAAGATAAACAAAATTATAACGTGACCTCCTGCCAAATCCACTGAACATGAGCACTTCTGGCTGAACACCTAAAGGAGGAAATAAAGTTCTCATATTATATGGCAAAAAATGGAATTCTCTTACATTATAATAAATGACATTTTCTATCTTAGTCATAGCCTGAACTTGTTCAAATTGCTTTCTTACTCAAATTTTAACTTTCTCTCAAACTGTCTTCACGCTGTCTCATGGGCTGTGGATACAAAAGGCAACATTGTGATCCCTAAAGACGGAGATGCTGAGGCACAGAGGATCAAGGGCAACCCAAGGTCACAAGCTCCTTAGCAGCTTGTGAGGCTACCCCTCAGCTCTCTTATTAGAACATCAGTCTTGAAGGATGAAAGAAGGTAGCCCCGAGTCCACTGCTGGGTGCACAGTGACCCCAGATGCCTTTGAGTCCTGGTGATTTCTTATGATTATGTTTGCTTCAATAACTACAGCATGGAGTACAGTGCATCTGCCTGGTGAAATTTCCAACTGGGCCCATGAAATATCATCAAGGTAGAGATTTATGCGTATAGATGACAATTCAGAATCTCTAGTAAGAAATGCTTCATCGCCTTTAG
Seq C2 exon
GACCTCTGAGTTCAGCAGCCATGAGTTCGGACCAGGAAATGGCCATCTTTGGGGAGGCTGCTCCTTACCTCCGAAAGTCTGAAAAGGAGCGCATTGAAGCCCAGAATAAGCCTTTTGATGCCAAGACATCTGTCTTTGTGGCCGAGCCCAAGGAATCTTTTGTCAAAGGGACTATCCAGAGCAGAGAAGGTGGGAAAGTGACAGTGAAGACCGAAGGAGGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007090:ENSBTAT00000012797:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.191
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0273614=Myosin_N=PU(78.6=48.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCGTCTCACTTCCAGGCT
R:
GCTCCTCCTTCGGTCTTCACT
Band lengths:
266-1712
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]