HsaINT0107692 @ hg38
Intron Retention
Gene
ENSG00000125414 | MYH2
Description
myosin heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:7572]
Coordinates
chr17:10547717-10549417:-
Coord C1 exon
chr17:10549375-10549417
Coord A exon
chr17:10547941-10549374
Coord C2 exon
chr17:10547717-10547940
Length
1434 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
GAAAGTTTTATCTCCTTTAGGAC
3' ss Score
7.59
Exon sequences
Seq C1 exon
AACTGTCTCACTCCCAGGCTACATCTTCTCACTTGCTAACAAG
Seq A exon
GTAAGATTTGGACTAACCAGTTCCTGGAGGAGAATGCAAGAGGCTCTGGGATGGATTTCTGTCACTTAGCAACCTTTCAGAAAGTGCTTGTCTCAGTAAATACCCTTTAACAACTGTGCTTCAGGAAAGCGGTGAGAAAGGGAGGACTGTCCTTTCAGGACAATGCACACATCCTCATTTACGGCTCAAGCATTGGTGGGGTGACATTTGAGCAGGGGAATCGCTTTGAATAAATATATTGTCTGTGCAGGAAAAAAAGAGTCTACCCTCAGATTCCCTGGCTAAAAATCTCAAATTTGATAAAAATGTATCCTGCTGTTAGAATTCATTTAGTAAACATAATGTCCAACAATGTAAAATGGAAGTAAGACAATCCTTTCTTTAAACTTCTTAAAGCCCTTGTAAAAAGTCACCTTACACAATGCCGAGTGCTGTGGCATTTTTCTTATATATAATAGAGGTATTAATCTGCCCTCCCACTACTTACTGCATTTCTAAAGGGAGAGACTAGAAGAGACGATTCAAATGAGTTTCAAGTAATTTGATCATGTAATGACTGCGGTAGAATTATTTGCCAAACCTTTCATTCTACTGATACCACTGGCAACCTACAGATCACATAGAACGGAGCAAACAGGGCCTGCATGCTTCAAAGGAAAATTTGGAATAGTAAAGGGAGCCCTTAGATGTAGAAGAATGAGGTTAACGTTGGCTACTGTTTTTATCCCTAATTAGTTTAAGGGGGTTAAACTGATGAACTGTATTTAATATGCAAAAAATTATGTCAGAGAAACTATACTAAGCACCTAACCTAAAAGAAAAAAAGGTAAACAAAATTATAATCTCCAATAAGCCACTGAACTTCAACAAATCTGGCTGAACAGGTAAAGGAGGAAATAAAGTTCTTCTACATTACATTCAAGACATGGAATTTTGTGACATGATAATTCATGACATCTCATATATAAATGGTGGCCTGAACAATTTCAAATTACTTTCTCAGTCATCATTTAAACCTCTTTTTCAAAGTATCTTCACATATATCATGGGCTGTGAATTTAGAAAGGCAGAATTTATAATCCCTATTCTAAAGATGGAGTCACTTAGGCTCAAAAACATCAAGTGACATACCCAAGGTCACAAGCTACTTGACAGCAGCACTGGACTGTAATTCAGTTCCCAATGAGAATGTGAGTCCTGGAGGATGAAATAAGACAGTGGATGCAAAGCCCTAAATACGGCATTGGGTACACAGAGACCACCTGATGCATTTTCGTTCTTGTGATTATGTTTGTCTCAGTAACTATAGTATGGTGAACAGTAGACCTGTCTAGTGGAATTTCCAACTGGGCCTATGAAATACAATAAATATTAAGATTTATTGGTATACATGGCAATCCAGACTCTCTAATGTGAAAGTTTTATCTCCTTTAG
Seq C2 exon
GACCTCTGAGTTCAGCAGCCATGAGTTCAGACTCAGAATTGGCTGTTTTTGGGGAGGCTGCTCCTTTCCTCCGAAAGTCTGAAAGGGAGCGCATTGAGGCCCAGAATAGGCCCTTTGATGCCAAAACATCTGTCTTTGTGGCGGAGCCCAAAGAATCCTTTGTCAAAGGGACCATCCAGAGCAGAGAAGGAGGAAAAGTGACGGTGAAGACTGAGGGAGGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125414:ENST00000245503:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.176
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0273614=Myosin_N=PU(78.6=48.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTCTCACTCCCAGGCTAC
R:
CTCCTCCCTCAGTCTTCACCG
Band lengths:
264-1698
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development