MmuINT0103423 @ mm10
Intron Retention
Gene
ENSMUSG00000033196 | Myh2
Description
myosin, heavy polypeptide 2, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339710]
Coordinates
chr11:67171220-67173319:+
Coord C1 exon
chr11:67171220-67171262
Coord A exon
chr11:67171263-67173095
Coord C2 exon
chr11:67173096-67173319
Length
1833 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TTTTTTTAAATCCCCTCTAGGGT
3' ss Score
9.61
Exon sequences
Seq C1 exon
GACCCTCTTATTTCCCAGCTGCACCTTCTCGTTTGCCAGTAAG
Seq A exon
GTAAGGGTTGGACTAACCAGTCCCTGGAGGCGTGATGGAGAATCTCTGGGACAGGTCCATGTCATTTCGCATCCTCTGAGAAAGTGCCTGTCTCAGGAGACACTAACTGCGTTTGAGGAAAGGGGCTGGGGAGGGATGGAGGATTTTTATCTCTGCCATGTGAGCAAAGTCAATTCTAAAAAGTTGGATTTTTTTGTTTTTTGTTTGTTTGTCTTGTCTCTGCAAGAAAAAGAAAATCCCTGCTAAAATCTCCTTGGTAGAAAAGCCAATAGAATTCATCTGGTAAATAAGATCTCTAACAAAAAAACGAAAGGAAGTACTTAGAACAATGGAACTTTTAAACTTCATGTATGCCTGTAGAAAGTCATCTCACAAAACCAAAACATAGTGAATTTTTAAAATAAGAAAACGAGGAATTCAGCAGCCCCATTACTGCTGCATGCTGCATCTCCGTAGAGGGAGATGGGGAGAGACGATTTAAAGGAGTTTCAAGCATTCGATCCTGCAGTGACTGTACTGGATAACTTCCCCACCTTGTATTGTTCTGCCACCTGTACCTTGAAGCAGTGTGGAACAAGCTGCCAGGTTTCACTTTCTGTACAAGGAAGCTTAGACCTCTGGGAGTCCTGCCATGTAGAAGCACAAAGATGGGCGTGGGTGTGTGGGTTATCTCCTTCATGAGTTAGCTTGGTTTAGTGTGCAAAGATACCATGTTAGAATAATTGCCCAGCATCCAACTTTAAAAGGGGGGGGGGGAGGTGACAAACAGAAACACAATTAAAATTCTTCCCAAACTACTTTGGGTAAATTTGGCCAAATATCTAAACATGAAAATAAAGTGGTCTTACTTTATATGGCCAGAAAGATGTGAGACATTAAAGTAAATGACATTTTCTATGCAAATAATTTCCTGAACCTGTTCCAATTACTTAGTAGTCATTTTAAAACATTTTCCCAAATATCACCCTATCCCAAGGGCTTCAAAGTGAAAAGAAGCTAGTACTATCATCCTTGCCCTAAAGATGGAGTTACTGAGGCTCAACATAATCAAGAGACTTACCCAAGGTCACACAATCCTTGGCAACATCACTCTACCTATAACCTAGTTTCCCAACTGGGATGCCAGTCTCAGAGGATGGGAGATACTAGATGCCTAATCCTAAGCACACATCACTGCAACCTCTTGAACTTCTGTTCTTGTGATGTCTGCTTCAGCAACTGCAGCCTGGTAGTAGTAGAATTGCCTAGTGTAATTTGCAACTGGGGCCCCTGCAGTAGACATCGTAACAGTGGTTCTCAACCCTCCTAATGTTGCTACCCTGTAAAACAGTTCCTCATGTTGTGGTGACCTCAATGACAGAATGATTTCATTGCTACTTCATAAGTGTACTTTTGTTATGAATCATAATGCAAATATTTGTGTCTTCTGATGGGCTCAGGTGACCCGTGAGAAAAGGTCTTTTGACCCCCCTAAAGGGGTAGCAACTTACAGTATGAGAACCACTGCACTATAAAGATTCCCTAGTTGGAGCTGGAGAAATGACTCAGTGGTTAAAAGTAATTGCTGCTCTTGCAGAGTTCGATTCCCAACACCTACATGACACTTCACAACCATCTGTAACTCCAGTTCCAAGGGATCTGATACTCTCCTCTGGCTTCTTTAGGCACCAGGCATGCACACAGTACACACAGTACATGCACACAGTATATGCATGAATGTACATACGTACAGGGAAGATACTCATACAAGTCAAATCGTGATAACTGTACAAAGATCTGCTGTTATACCAGGCACTGCAGACTGTATGATTTTTTTTTTTAAATCCCCTCTAG
Seq C2 exon
GGTCTGTGAGTTCAGCAGTCATGAGCTCCGACGCCGAGATGGCCGTTTTCGGGGAGGCTGCCCCTTACCTCCGGAAGTCCGAAAAGGAGCGAATCGAGGCCCAGAATAGGCCTTTTGATGCCAAAACATCTGTCTTTGTGGCGGAGCCCAAGGAATCCTTTGTCAAAGGAACCATTCAGAGCAAAGATGCAGGGAAAGTGACTGTGAAAACAGAAGCAGGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033196:ENSMUST00000018641:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.059
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0273614=Myosin_N=PU(78.6=48.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCTTATTTCCCAGCTGCA
R:
CGCTCCTGCTTCTGTTTTCAC
Band lengths:
265-2098
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types