HsaINT0107692 @ hg19
Intron Retention
Gene
ENSG00000125414 | MYH2
Description
myosin, heavy chain 2, skeletal muscle, adult [Source:HGNC Symbol;Acc:7572]
Coordinates
chr17:10451034-10452734:-
Coord C1 exon
chr17:10452692-10452734
Coord A exon
chr17:10451258-10452691
Coord C2 exon
chr17:10451034-10451257
Length
1434 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
GAAAGTTTTATCTCCTTTAGGAC
3' ss Score
7.59
Exon sequences
Seq C1 exon
AACTGTCTCACTCCCAGGCTACATCTTCTCACTTGCTAACAAG
Seq A exon
GTAAGATTTGGACTAACCAGTTCCTGGAGGAGAATGCAAGAGGCTCTGGGATGGATTTCTGTCACTTAGCAACCTTTCAGAAAGTGCTTGTCTCAGTAAATACCCTTTAACAACTGTGCTTCAGGAAAGCGGTGAGAAAGGGAGGACTGTCCTTTCAGGACAATGCACACATCCTCATTTACGGCTCAAGCATTGGTGGGGTGACATTTGAGCAGGGGAATCGCTTTGAATAAATATATTGTCTGTGCAGGAAAAAAAGAGTCTACCCTCAGATTCCCTGGCTAAAAATCTCAAATTTGATAAAAATGTATCCTGCTGTTAGAATTCATTTAGTAAACATAATGTCCAACAATGTAAAATGGAAGTAAGACAATCCTTTCTTTAAACTTCTTAAAGCCCTTGTAAAAAGTCACCTTACACAATGCCGAGTGCTGTGGCATTTTTCTTATATATAATAGAGGTATTAATCTGCCCTCCCACTACTTACTGCATTTCTAAAGGGAGAGACTAGAAGAGACGATTCAAATGAGTTTCAAGTAATTTGATCATGTAATGACTGCGGTAGAATTATTTGCCAAACCTTTCATTCTACTGATACCACTGGCAACCTACAGATCACATAGAACGGAGCAAACAGGGCCTGCATGCTTCAAAGGAAAATTTGGAATAGTAAAGGGAGCCCTTAGATGTAGAAGAATGAGGTTAACGTTGGCTACTGTTTTTATCCCTAATTAGTTTAAGGGGGTTAAACTGATGAACTGTATTTAATATGCAAAAAATTATGTCAGAGAAACTATACTAAGCACCTAACCTAAAAGAAAAAAAGGTAAACAAAATTATAATCTCCAATAAGCCACTGAACTTCAACAAATCTGGCTGAACAGGTAAAGGAGGAAATAAAGTTCTTCTACATTACATTCAAGACATGGAATTTTGTGACATGATAATTCATGACATCTCATATATAAATGGTGGCCTGAACAATTTCAAATTACTTTCTCAGTCATCATTTAAACCTCTTTTTCAAAGTATCTTCACATATATCATGGGCTGTGAATTTAGAAAGGCAGAATTTATAATCCCTATTCTAAAGATGGAGTCACTTAGGCTCAAAAACATCAAGTGACATACCCAAGGTCACAAGCTACTTGACAGCAGCACTGGACTGTAATTCAGTTCCCAATGAGAATGTGAGTCCTGGAGGATGAAATAAGACAGTGGATGCAAAGCCCTAAATACGGCATTGGGTACACAGAGACCACCTGATGCATTTTCGTTCTTGTGATTATGTTTGTCTCAGTAACTATAGTATGGTGAACAGTAGACCTGTCTAGTGGAATTTCCAACTGGGCCTATGAAATACAATAAATATTAAGATTTATTGGTATACATGGCAATCCAGACTCTCTAATGTGAAAGTTTTATCTCCTTTAG
Seq C2 exon
GACCTCTGAGTTCAGCAGCCATGAGTTCAGACTCAGAATTGGCTGTTTTTGGGGAGGCTGCTCCTTTCCTCCGAAAGTCTGAAAGGGAGCGCATTGAGGCCCAGAATAGGCCCTTTGATGCCAAAACATCTGTCTTTGTGGCGGAGCCCAAAGAATCCTTTGTCAAAGGGACCATCCAGAGCAGAGAAGGAGGAAAAGTGACGGTGAAGACTGAGGGAGGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125414-MYH2:NM_001100112:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.176
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0273614=Myosin_N=PU(78.6=48.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTCTCACTCCCAGGCTAC
R:
CTCCTCCCTCAGTCTTCACCG
Band lengths:
264-1698
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)