GgaINT1018563 @ galGal4
Intron Retention
Gene
ENSGALG00000026748 | MYH1A
Description
myosin, heavy chain 1A, skeletal muscle (similar to human myosin, heavy chain 1, skeletal muscle, adult) [Source:RefSeq peptide;Acc:NP_001013414]
Coordinates
chr18:448803-451434:-
Coord C1 exon
chr18:451388-451434
Coord A exon
chr18:449044-451387
Coord C2 exon
chr18:448803-449043
Length
2344 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
ACATATCTGCTCTTCCATAGTGT
3' ss Score
7.65
Exon sequences
Seq C1 exon
CTCTGATCATCTTCCAGTCAGCACAAGACCTTCTTGTGTCACAAGAG
Seq A exon
GTAAGAGCCTAATTTACTCACTTTTAAGGGATAGTCAAAAAGATGGAGGATTTCTGTAGATCTGTTCTTTTGTTGTTGTTGTTGTTTTGGTTTGGCTTGGGGTTTTTTTGTTTTTTTGTTTTTTTTTTTTGTTTTGTTTGTTTGTTTGTTTTGTTTTGTTTTTGGTGGTATATTTCTGTGCAGTTGCACAGGCAGTTGGCATAAGCCCATACATTCCTGTCCACTGCCCTGTTATGGTAAACACAGCACATTTACCGTTGAACAGGCTGGGCTGCTCATGGCAAGCAAGCTTTCCAAAGTGTATGTGCTTGAAGCTACTAGCTAGCCACTGTTGCTATGCCAGGAAATGCTTCCTGGGGATTCCTCAGGTTTAACCATGGATCAGTGAAGTAAATGATCTGTTCTGGCATGAAGTCTAGCTAGACAAAGCCAGCCAACAGAACAACTAATGGCAAAATCTTTCAGGTTTGCAATAAAATGTATGAATTATTGTACAGAACATACACTGTACATTGTCCAGAAATTGCTATGAAAATGCCTGTCAGACCATACTATGGGGTTATAATCTGCATGTGGTACTTCTACTAGGAAATCTGGTAAAAAAGCCAAAAACAACTAATATACAATAAAAATAGAGATATTTTTCTACTTTACCTCTAAAATTAAATAGACTAAAATGGAGGCTCTGCATACTATTAGGAATCGTACAAAGTGTTGGCATTTGGTTGATTCATTTAGGCAACTAGAAGCTCTAACATAACATCTAAATGAATTGCCTGCCTGACTTCCTAGGAACTCATGTGTTCTCTATCACTAGACATGCAGTGTTTCCTTGGGAACGCCATACTGCATTTCAATATCTATTTTTGATATGTAAATTCTTGAACTGAGGCTGATAAATTTTTAATATAACTATTCTCTGATGATCCAGTATTTTAACTTGCTGAATTATCCATCATTACGTACTATTTGCACTATACTATTTTCCAGAGCTAAATCTCTTACAACTGGTTTCTGCTGTTGTCAATGAAATAACAGTGTATTTTATTTAAGGTGAGATCTGCACTGAAATTTAAGCATGAGACTGAACAGGAATTAAACTGCAACTTGTACATTCTCAGATGAAACATGGAAAAAGTCTTACTTTGTTTAGATGGAACAGATCTCTAAATTTTCCTGTAAGATTTTTTTAGATCATTGAAATTGCTTCCAATAATTAACAACCAGAACTGTTTCTAAATAGGACCTAGTAAATCTCACAATTTAAACACACACACACACACACACAGAAAAAAAAAAGAAAAAGTTTTTTGTAACTGTTAAACACCTAAAGGAGACAATTTGATAAGCAGGGCTCAGCTAGCACTGACTTGTATGGCTGATACCTCAGCTAACGTTCAGAGTTTATGTAGAACAGTAGGAAATGTGTTGAACACATCTAATGCACATTTGATAATCAGAATCTATGCTAAAAAAAAAAAAAAAAGAAGAGACTGGAGACCAAGATTTCTTTAGCCTGAGGAGGTTTGACTTAGCCCTACTTGTGTTTTTAAAACATTGCCCTCACCATGGGTTTGGAAAGCATTCTGTATCACAGGATCTTTCTACTGGAGCAAATGTGCCACTGTGCAACCAGGGATGCAACAGACATCAGTATTGCAGGAGGACAAGCAGGATGGATGTTGCCCGTAGGGTATAGTTTTCTAGAATCTGCAGGTAGAGGTTCTAGTCCTATAACCAGAAAGATACACAGAAATAGGAGTTGCACATCTTATTCCAAAGCCTGAATTTACAATGCAGGACTCCTTAAGAAACTTGTGATGAGGAGCAAACTCCAGCAAATGATTCAAAACACCAGCAATAAGCATCAAGTAATAGTCCTCAGAACACCTTCTGGATACACCCACCTCTATTTTGTATATAGGCATGTATAGTTATTAGTGTGGGCATTTTGGTTGGGTAACTTCAGGTAGGTGGTATGAATATCTTCTTCTGACATGCCTCACTGTAATGCTTCATTTCTTTGTTGGAATCCAGAGCCGAAGGTCATAAATTATTTAAAAAATGCTTTTAAATCATTGAGCTTATAAAATTACAGATGCTTTATTGATGTTGATTTCATCACAGTAGCCTGGAAGTATTCCTCCTGAAATACTCTTTATTAAAAATTTCCTGGTGAAATCCAATATTGTACCTGCTTTGCATAGAGAAAAATGGACCATAGACAGATGTTATGAGATTCTTCTCAGCAAAATAATTCCATGATGCTGTGGAAGGTTTCCAGAAAACTGAATGGCAACAGAAACTGTTGACTAATCTGGGCAACATATCTGCTCTTCCATAG
Seq C2 exon
TGTTCTCTGCTGACAAGACTCTCCATACAGTGCAGCCATGTCTTCAGATTCTGAAATGGCCATATTTGGGGAGGCCGCTCCCTACCTCCGAAAGTCAGAGAAGGAACGAATCGAGGCCCAGAACAAGCCTTTTGATGCCAAGTCATCAGTCTTTGTGGTGCATCCCAAAGAATCTTTTGTGAAAGGGACTATCCAGAGCAAAGAAACAGGGAAGGTCACTGTCAAGACTGAAGGTGGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026748:ENSGALT00000039878:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.176
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0273614=Myosin_N=PU(78.6=48.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]