DreINT0100078 @ danRer10
Intron Retention
Gene
ENSDARG00000012944 | myhz2
Description
myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
Coordinates
chr5:31606364-31607873:+
Coord C1 exon
chr5:31606364-31606400
Coord A exon
chr5:31606401-31607654
Coord C2 exon
chr5:31607655-31607873
Length
1254 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
ATTCATACTACTTTCTTTAGTAA
3' ss Score
2.41
Exon sequences
Seq C1 exon
GGTAGTGAATTATTCATCTGGTCTCAAGGAACGCAAG
Seq A exon
GTAAGATTTTGGGTAGAGCTTGTTTATTTGTGAGAAGATATCTAAAGCATGCTGCATTTAAATAACTTAAACAAAGATGTTTTAATTAAGAAAATTCAATTTGAATTAAATTAGATTTTTAAAGCTCTTTTCACAATAACTATCACCTTTACAAAAGGTGAATGTTATTACATCACAATCAAAATGAGTTAAGGTGTAACTAACCTTAATAACAATGAATACATTGTTAATAAAGTGATCTAATCATTACAACAATTAAGAACAATTTACAAAAATCTAATCTATTTTGGGATCTGTATCTGTATCTATTTACAGATACTCTATATGCACCTAAAAATATTGTAGTAGTAGGATAATTCTAGGGATTAGGTGCATTGTGTTGTTTAGTACAAAGCACTGAAGGTGCACTTAACATAATAGCTTTTTAATGTCTCATATTATAGTCATGTTTTTGTTCCACTTGTAAGGTGATGACAGCCCATACAACTGATTATGAAAACTGGAACAAAGAGAGCACAGTATAAACATAACTCAACATAAGCTAAAGTTTAGGACTTTAGCTCAAACTGTTTTGTGTTAATAAAAATCCAATAACTAAACTCCACAAATAACTTTACACAAATGTAACTTTCTGTCATTACAAATTTTTCTATTTTCATCTTAATTTCATTTTTAGCAAAAACTTATTTATTAAACTCCCCATGGGCAGTTTTAATAGAAATCAAAATAGATAATTGTCAGATCATACTAACAAAAAAGTTACACAATTTTTATTGAAGATGATAAGACTCTTCTCAAATATTATACACAAGCTCTCCAAAATAGACAGACGGTTGTATCTTAACAGGATCTATGCATATTCCGATCACACTTTGTCCATGGTTATAGTATGCATCACCTTAGGACATCTGCCCAGTTTCAACAAAACATGTCAAAAATATATATATAAAAAAAAAAAACTATTATCAAACATCACAACTAACATTCTGTGCATAATTCTTCATTTTTTAAACACAAAATAAGATTTAAAAATAAAACAACATTGTTTAAAATAATACTCTACTAATGACAGTGAATAGTGATGAGCAAAGTTGTGAAAAAGCAAGATTAATAAATGTTGCTTGGCTGCTTAAATGCTCCTCACTTATATTTATTCTATATTCTATGTTTTTATACATTTTATGTAAAATTGTTTGCATTATAAATGAAAATAATATTAATTTTAAAATTAAATATTCATACTACTTTCTTTAG
Seq C2 exon
TAAGCCGCCACCATGAGTACTGACGCGGAGATGGCCATTTATGGCAAGGCTGCCATTTTCCTCCGTAAGCCTGAGAAGGAGAGAATTGAAGCTCAGAGCAAACCATTTGATGCCAAAACCGCTTGTTATGTGGTTGATGACAAAGAGCTGTACGTCAAGGGAACAATCAAGAGCAAAGATGGTGGCAAAGTCACTGTTGTTACACTTGACACTCAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012944:ENSDART00000126873:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.029
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0273614=Myosin_N=PU(79.1=49.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAGTGAATTATTCATCTGGTCTCA
R:
CGTCTGAGTGTCAAGTGTAACA
Band lengths:
256-1510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]