MmuINT0103588 @ mm10
Intron Retention
Gene
ENSMUSG00000053093 | Myh7
Description
myosin, heavy polypeptide 7, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:2155600]
Coordinates
chr14:54992673-54993359:-
Coord C1 exon
chr14:54993304-54993359
Coord A exon
chr14:54992882-54993303
Coord C2 exon
chr14:54992673-54992881
Length
422 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
ACAGCTGCTCCTCACCCCAGGCT
3' ss Score
6.91
Exon sequences
Seq C1 exon
CTCTTCTACAGGCCTGGGCTTACCTCTCTATCACTAGACACGTTTGAGAATCCAAG
Seq A exon
GTGAGAAAAGTTGGAGTCCAAATGTTGGGAGATCTGGTAAAACTGCACATAGTTAAAGCCCAAAGCCCCAAGCCCAAAGCCTGGCAGGTTCCTTTCTGCCTGCTCAGAGACAATGGCCTGGTGTCCAGAAGCTTCATACTCAGGGCCAGTGAGGGGCAGGGACTATTGACAGTCAGAGATTGATACAGAGTTCTTTCCCCGAAATACGGTCAGGACACACTCAAAGAGTGCTCCAAGTGAACGAAAGTAAAGCTGCCCCCTTGCCTTGGCACAGTTGCCAGGCTGCTCTCTGGTTTAGGGGTGAGCCTGGAGAAGGGTAAACTCCTGAGTGCTGAGCACAGTACTGGATTTGGGAGCTGCCACTGAGCGGGAGAGCCCAAGGTGCGGGAAGGCATATAGGTAACAGCTGCTCCTCACCCCAG
Seq C2 exon
GCTCAGCCATGGCGGATGCAGAGATGGCTGCATTTGGGGCTGCAGCCCCCTTCCTGCGGAAGTCTGAGAAGGAGAGGCTGGAGGCACAGACCAGGCCCTTTGACCTCAAGAAAGATGTTTTTGTGCCCGATGACAAAGAAGAGTTTGTCAAGGCCAAGATCGTGTCCCGAGAGGGTGGCAAAGTCACTGCTGAGACGGAGAATGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053093:ENSMUST00000102803:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.134
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0273614=Myosin_N=PU(78.6=49.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTCTACAGGCCTGGGCTT
R:
CTTGCCATTCTCCGTCTCAGC
Band lengths:
265-687
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types