HsaINT0107859 @ hg38
Intron Retention
Gene
ENSG00000092054 | MYH7
Description
myosin heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:7577]
Coordinates
chr14:23417503-23418406:-
Coord C1 exon
chr14:23418210-23418406
Coord A exon
chr14:23417687-23418209
Coord C2 exon
chr14:23417503-23417686
Length
523 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
TGCCACCCTCCCCTGGGCAGGAA
3' ss Score
8.66
Exon sequences
Seq C1 exon
GCGAAGAACGCCCTGGCCCACGCACTGCAGTCGGCCCGGCATGACTGCGACCTGCTGCGGGAGCAGTACGAGGAGGAGACGGAGGCCAAGGCCGAGCTGCAGCGCGTCCTTTCCAAGGCCAACTCGGAGGTGGCCCAGTGGAGGACCAAGTATGAGACGGACGCCATTCAGCGGACTGAGGAGCTCGAGGAGGCCAA
Seq A exon
GTGAGTTCTGAGCAGCCTGACTTCTGGCTGAGGCCCCTTTGCAGGCAGGACTCAGCCCAGCCCCAGCCTCAGCAGATCCCACACAGGCGATGCTTAGCTAGTGTTTGACAACACAGGAGGACTCTGCCCCGGCCCCACCTCCTTCTCCTCTCAGGGAAGCTTTTTGCTCGAATTATGTTTCTGATCCGAATATAAGACGAACAAAAGGTTTGTCTGAGGGCAGAGTGCTTCCGTCTGGGGCAGGGCACTGTGGCAGGGAAAGGCAGTGGGGAGGGCTGCAGAAGCCCATACCTCCTCAATGTCCATAGCGCAGAGGCTGGGCCAGGGTCAGAGGGTGCCTGGGTCTCCACGCCCTGCTGGGATCCTCTGCCTGATGTTCTCGGCCCCTGGGACCTGTCCTCAGGCTTCTCCAGCTACACTTCTGAGGTTTCAAGGATTGTCTTTGAGAAGGTTCATGTTGTTTCCTCTTGTCCCCATCCACACCCTCCATCCTCCCCACCCTCTGCCACCCTCCCCTGGGCAG
Seq C2 exon
GAAGAAGCTGGCCCAGCGGCTGCAGGAAGCTGAGGAGGCCGTGGAGGCTGTTAATGCCAAGTGCTCCTCGCTGGAGAAGACCAAGCACCGGCTACAGAATGAGATCGAGGACTTGATGGTGGACGTAGAGCGCTCCAATGCTGCTGCTGCAGCCCTGGACAAGAAGCAGAGGAACTTCGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000092054:ENST00000355349:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.394 A=NA C2=0.226
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.6=100),PF0003816=Filament=FE(20.8=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.1=100),PF0003816=Filament=FE(19.6=100),PF045827=Reo_sigmaC=PU(32.9=75.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGACTGCGACCTGCTG
R:
TTGTCGAAGTTCCTCTGCTTCT
Band lengths:
342-865
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development