MmuINT0103590 @ mm9
Intron Retention
Gene
ENSMUSG00000053093 | Myh7
Description
myosin, heavy polypeptide 7, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:2155600]
Coordinates
chr14:55594071-55594912:-
Coord C1 exon
chr14:55594716-55594912
Coord A exon
chr14:55594255-55594715
Coord C2 exon
chr14:55594071-55594254
Length
461 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
CCCTCCTTCCCCTACTGCAGGAA
3' ss Score
10.66
Exon sequences
Seq C1 exon
GCCAAGAACGCGCTGGCCCACGCACTGCAGTCAGCACGGCATGATTGTGACCTGCTGAGGGAACAGTATGAGGAGGAGACAGAGGCCAAGGCTGAGCTACAGCGAGTCCTGTCCAAGGCCAATTCAGAGGTGGCCCAGTGGAGGACCAAGTATGAGACGGATGCCATACAGAGGACAGAGGAGCTGGAGGAAGCCAA
Seq A exon
GTGAGTCCTGGGTAGCCAGCCCTGGTTGAGGCTCCTCTGCAGCCCAGTCTGATGCTCAGTAGTCCACACAGAGGGGACTCTTAGGCACCCCCACCTCCTGCTCCTCTCAGGGAAGCTTTTTGCTCGCGTTATGTTTCTCATCCGAATATAAGACGAACAAAAGGTTTGTCTGAGGGCTGAGTGCTCCCACCTGGGGTACGGTGCTGTAGGGAATGGGGCTGCTGCAGCCAAGAAGGATCAGGCTCATGGTGCTCAGTGGTGCTATGCCTTCATGCTCAGCTACTAAGATTTGTCTGCCAAGTGCCCAGCCTCTGAAGCCCATCCCCAGCCTTCTCTGATTGCTTCTAGATAGTCAAGGATAGTCTTTTGAAAGTCACATGTTCTCCTCTTGTCCAAACCTACCTCCTCCATTCTCCCCATCCCTCTCTTCCCGGCCACCCTCCCTCCTTCCCCTACTGCAG
Seq C2 exon
GAAGAAGCTGGCTCAGAGGCTGCAGGATGCAGAGGAGGCAGTGGAGGCTGTCAATGCCAAGTGTTCCTCTCTGGAGAAGACCAAGCACAGGCTGCAGAATGAGATCGAGGACCTGATGGTGGACGTGGAGCGCTCCAATGCCGCCGCCGCAGCCCTGGACAAGAAGCAGAGGAACTTTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053093-Myh7:NM_080728:31
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.394 A=NA C2=0.226
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.6=100),PF0003816=Filament=FE(21.1=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.1=100),PF0003816=Filament=FE(19.8=100),PF045827=Reo_sigmaC=PU(32.0=75.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCAGCACGGCATGATTGTG
R:
TCCTCTGCTTCTTGTCCAGGG
Band lengths:
342-803
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: