HsaINT0107861 @ hg19
Intron Retention
Gene
ENSG00000092054 | MYH7
Description
myosin, heavy chain 7, cardiac muscle, beta [Source:HGNC Symbol;Acc:7577]
Coordinates
chr14:23886077-23886527:-
Coord C1 exon
chr14:23886362-23886527
Coord A exon
chr14:23886202-23886361
Coord C2 exon
chr14:23886077-23886201
Length
160 bp
Sequences
Splice sites
5' ss Seq
AGGGTGTGC
5' ss Score
3.55
3' ss Seq
TTACCGTGTTCCCCACACAGAGG
3' ss Score
8.8
Exon sequences
Seq C1 exon
ATCCTGGCCGAGTGGAAGCAGAAGTATGAGGAGTCGCAGTCGGAGCTGGAGTCCTCGCAGAAGGAGGCTCGCTCCCTCAGCACAGAGCTCTTCAAACTCAAGAACGCCTATGAGGAGTCCCTGGAACATCTGGAGACCTTCAAGCGGGAGAACAAAAACCTGCAGG
Seq A exon
GTGTGCTGGGGGCCCAAGAGGCTGGGGAGGGGCTGCACTGGCAGTGTTCCCATATGGTGCCACCCAAGGGCTCCAAGAGGCGTCTGGGCAAAGAGGCGTGTCCCTCCAACTCCACTGGACCTCAGCAGCCCTCAACCGAGTTACCGTGTTCCCCACACAG
Seq C2 exon
AGGAGATCTCCGACTTGACTGAGCAGTTGGGTTCCAGCGGAAAGACTATCCATGAGCTGGAGAAGGTCCGAAAGCAGCTGGAGGCCGAGAAGATGGAGCTGCAGTCAGCCCTGGAGGAGGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000092054-MYH7:NM_000257:32
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=NA C2=0.810
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.4=100),PF0003816=Filament=FE(17.6=100),PF045827=Reo_sigmaC=FE(38.5=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.8=100),PF0003816=Filament=FE(13.1=100),PF045827=Reo_sigmaC=PD(27.3=92.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGAGGAGTCGCAGTCGGAG
R:
GACTGCAGCTCCATCTTCTCG
Band lengths:
248-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)