HsaINT0107963 @ hg19
Intron Retention
Gene
ENSG00000100345 | MYH9
Description
myosin, heavy chain 9, non-muscle [Source:HGNC Symbol;Acc:7579]
Coordinates
chr22:36702460-36705441:-
Coord C1 exon
chr22:36705327-36705441
Coord A exon
chr22:36702654-36705326
Coord C2 exon
chr22:36702460-36702653
Length
2673 bp
Sequences
Splice sites
5' ss Seq
ATGGTACGC
5' ss Score
8.57
3' ss Seq
GTTCTCTGTGGTCTCCACAGTGG
3' ss Score
8.79
Exon sequences
Seq C1 exon
GTGGATTACAAAGCTGACGAGTGGCTGATGAAGAACATGGATCCCCTGAATGACAACATCGCCACACTGCTCCACCAGTCCTCTGACAAGTTTGTCTCGGAGCTGTGGAAGGATG
Seq A exon
GTACGCCCTTTGCCCTTCGCCCCCTGCCTCCTCTTGGCTGCGGCTGGTCATCTTCCCACCTCCACAGTGGGCCGAGCTGCCAAACAAGGGGTACACATGTGCCCCCTGACATAGGCCAGGTGGTCTCTGCCCTCTGTAGCTCCCATGAGAGAGGGCTCCTCGGACCGAAACAGGAGGCCACTGCCTTGCGCACACACCGTGGCCGGGTCCTCCTGGGCGGAGCGCTTTCCGTGTGTGGGAAAGTCAAGGGCAGCCCCGAGCCTCGAAGCCCAGGGTCCCAGCCCCGCGCCATGTTGCATTCCCGCCTCTACTCCTTGGTAGGCTGGTTGCTTTGAGTGGTTCTTTTTAATTCTTTCTGTTGGTTTCTCCTTTTCCTTTGCCTGGGTTTTGCTTTAACCTCTCTGTTGCAGAGATGCAGAGCACTCAGAGAGCCTATTTCTATCATCGCTTTCCTATTCTCCACCTAGAACCAGGTGACTGGCCGCCCGAGTGGTGTCTCTTGTGTGTGTGGTGCGTCCAAAGCTGTGCAAGAAATGCTTCTGCCTAGGTTTTCTCGCGCCCCCCCTTGCCTTGGCTTTTCCTGCCTGCTTACACCCCCGTTCCCTGATCTGCCCCTGGGCTTCTGGGCAGGTTCCCCGCACTGTGCCTATCGCCGGCCTGTAGTAGCAAACTGGGCAAATGAGGGGCTGTGTCTGGAATTTGGAGACGTCACATTCAAATCTTAAAACACTGTAATCCCAGCAATCTGGGAGGCTGAGGCGGGAGGATTGCTTGAGGCCAGGAGTTTGAGACCATTCTGGGCAACATAGGGAGACCCTCATCTCTACAAAAAAATTAAAAAAAAAAAAATCAGCTGGGTGTGATGGTGCATGCCTGTAGTCCCAGCTGCTCAGGAGGCTGAGGCGGGAGGATCACTTGAGCACAGGTCAAGGCTGCAGTGAGCTGTGATTGCACCACTGTACTCCAGCCTGGGTGACAGGGTGAGACCCTGCCTCAAAAAAAAAAAAAAATCTTAAAACAGCAAAAATTGTTTAAAAATTTGTATCCTCCTTAGAGCTTCATGCCTAAAGACAGCGTCTTAAACTGCTTGAATGGCTGCGAGTGTCTTAGCATGAGGTTCAGGTATGCACACTGCTGTGTCTGTGCACCTGAAAGCTGAAGTGGCATCTGTGTGTTCATTCAACAGTTGCTCGGCAAGGTCTGCTCCATGGGGGTGGGGCCAGGACACACTCAGCTAAAAGGGCCAGTTATGATGAGGCCACATTAACCTTTCTCTGGACAACCTGAGTGGCTTTTGCAAGTTACCACGCCCAGGAAACCTGTGGTAGCCAGGAATATTGACCCTGTGGTGGGTACATAAGGTCAAAGATGACTCCCTTTTTTTTTTTTTTTGAGACAGAGTTTTGTTCTTGTCACCCAGGCTGGAGTGCCATGGTGCAATCTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTAGGATTACAGGCACCCGCCACCACGCCCAGCTAACTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTAGCCTGGCTGGTCTCGAACTCCTGACTTCAGGTGATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGCGAGCCACCATGCCCAGCCACCTCCCATTTTAATTGACTGGTTTGTAGGCTCCATCCACACTCCTGGCTTCTGTCTTAAGCAAGCATCCTTTTTGCTGTCTTCAAGTAAATAATAGTAATCTGGCCGTGAAGGAATACGAAACGGGCTTCGTCAGTATTCTTCACTTTTATATCCAGTAATAGAAGGCTTCACATTTAACATTAGCTCTTGCTTAAACTGATCTCAAATCGCTGGCCACTTTGGTTTGGCTTGTTTGTTTGTTTTTTACCTTGGAGGATGCAATTGGTTTAATTGCTGCTGGGTGTGAGTTCCAGTGCTAGGGGCTGCTTCCCTTGAGGGTCGGTTTACATGAGAAAGACCCGTGCACCAGGAGACAAAATGAAATACAAGTACGTGAAGAGATCCCTAAACTTTGGAGTATTTATAATCAAGAGCAGTTCTTTGGAGCTCTCCCTTCCTGAGATGTCTGCGTAGATATAGAGGGGACCCTGCAAGGTTCTGCAGACAGTGACAGGGTGGCCCCAAGCTCTGCCTCCTGACTCCCAGCCGAGTGCTCTTATGACAGGGTCAGTGAGAATTCAAGATACTGATTTTTTTTTTTTCTAACTGTGACCATAGGACAGCAGGATTCCGTAAGCCAGGTTTTCACACCCCTCGTTAGAGCCAGGCTAGTAGAATTCTCACTATTCCAAAATACATGACTAGCTTCATTGAGTCTTTTTGGAAATAAGAGCTTCGAGAGTGGCTGAAGATAGGTGACAGGAAGGTGAGGTGGCCATGGCAGATGCATGGCTCCCCAAGAGACAAGCCCAGTGCCTTTGCATCCCCCTTGGCTTCCCGCTGTGTTTGGGGATGACCTTAGCACCCAGTGTAGGCTCCAATTGGAAAGGGTCCTGTTGTTTCATTCTGTCTCCTCTTTTCCTGTCCGACGTGTGCCTGTCTCTCTCTCCTACGTGCTCCCCCACCACCCAGCTGCAACTGTGTGGGCACTCACGTGTTCTCTGTGGTCTCCACAG
Seq C2 exon
TGGACCGCATCATCGGCCTGGACCAGGTGGCCGGCATGTCGGAGACCGCACTGCCCGGGGCCTTCAAGACGCGGAAGGGCATGTTCCGCACTGTGGGGCAGCTTTACAAGGAGCAGCTGGCCAAGCTGATGGCTACGCTGAGGAACACGAACCCCAACTTTGTCCGCTGCATCATCCCCAACCACGAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100345-MYH9:NM_002473:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(9.4=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)