MmuINT0103690 @ mm9
Intron Retention
Gene
ENSMUSG00000022443 | Myh9
Description
myosin, heavy polypeptide 9, non-muscle [Source:MGI Symbol;Acc:MGI:107717]
Coordinates
chr15:77611752-77613933:-
Coord C1 exon
chr15:77613819-77613933
Coord A exon
chr15:77611946-77613818
Coord C2 exon
chr15:77611752-77611945
Length
1873 bp
Sequences
Splice sites
5' ss Seq
ATGGTACGC
5' ss Score
8.57
3' ss Seq
AAGCTATATGTTCTTCACAGTGG
3' ss Score
4.03
Exon sequences
Seq C1 exon
GTGGACTATAAAGCTGACGAGTGGCTGATGAAGAACATGGACCCCTTGAACGACAACATCGCCACGCTGCTTCACCAGTCCTCAGACAAGTTTGTCTCTGAGCTGTGGAAGGATG
Seq A exon
GTACGCCTGCCCTTTGCCCTCCAGCCCTGCCTCACACTGGGCCTGTCCTCCTCCCAGTCTGCACAGGACCCAGCCACCATACAAAGGACCATGACACTGGTCAGGTGTCTTTTGTCCTTTGTGACGCTCACAAGGAAGACCTGTCTGAATTGAAAGGGACAGTTTGCCCCAAGCGGCACCCTAGGCATCTCCTCCTGGCTAGAGGCTCCGTAGGCTTGGCTGGCTCTCTGGCCAGGTGGCCAGGCCCCTTCCGCAGGTAGCCCCAGCCATAACCACGCGGGCCTGCAGCCCCCAAGCGTCCCTGCACTTCTGCCTCTCTCTCCTCCTCAGGAGGCTGGCTGCCTTGAAGCTGTTCTTTTTCTGCCTCTCATTTTCCCCTCTCCTCCGCCTGGGTCTTGCTTTAACCTCTCTGTTGCAGAGATGCAGAGCACTCAGAGAGCCTATTTCTATCGCCGCTTTCCCATTCTCCACCTAGAATCAGGTGACTGGCTGCCTGCCTGCACTGGGGTGTCGTGTGTGGCGTACCCAGGGCTGTGCACGTTTTGCACGTGTCTGTCGTACTTTCCTCACCCATGACTCCTCCTGCCTGGCTGTGCCTGTTCCCTGTGCTACCCGGGGTTCCTGTCCTCAGTATGTCTGGCACAGGCCTCCACTAGAAAGCCATGCTTCTGAAGGACTGGGTTGGGATGTTGGAAGTTTTACATATAGGAAAAAAAAAACCCTGCTTCCTTAGAGCTCCCCCTAGAGGCCGTGTCTTCTGTTTGCACAGCTGTGTGTCTTGCCTGAGGTTCAGGTGCAGTGTGTGCTACTTTGTGTCTAGCTGAAGGGTAGCTGTATGGTCCTTCAACAGTTAATCTTCAGAGAGCACTAGCCCTGTAGGTCAGCAGCAGGAGACATACAGGGACCAGTCGCCATGGGGCCACATTCCCCTAATCTAGGACTCAAGTGTTTCCTCCAGCCACATACCCCCAGGCTTTGGAGGCCAGTCTATGTAACTGGCCCCATGACGGAGTACTGAAGTCAGAGCTGCCTTCAGACTTAATACTAGCCCTTGCTCTAAGCTGATACCCGTGGCTGGTGCTTGGATTTGGTTGGCTTGCTTTTGTTGTTAGCTTGGAGAAACTGTTCACTGCTGCAGGGTGTGGACTATACAGATACGAGCCATGCCTTGTAGGGTTGGTCTAGAGGGTAAAGACCTATGGGCAGCAGCCACGTACCATGTAATACTGTGAAATGTTCCAGGAAGACCCTTAGGAATACTTTGGGTAGCACTGGGTTTTCAGAATTGTTTCTAACGCTCCCATGGATTGCCCCAGTACCTGCTTTAGAGGTTTCTGCTGGGGGGTGGGGGGGACCTACACAATGAGTCCTCTGATCCTGTCTATGATGACAGAGCATATCTGGACATCCCATTGCTTGGCTCCTAGGCCAGTGCTTTTAAGAAAAGGTCACTGTGAACTCAGATACTATTTTTTTTTAACCTAGAACCACAGGAATCTATATGTGCTAAGCCAGGTTTTAAGGCAGAGCCGAGCTCAGGGAAACCTCCCAGTTCTAAACACATTTCCAACTTCATTGGTTCACCTTGGGGCATCAGCCCTGGAGGGCCTTCCCAGGCTGGCTAGAGTAGGGGACATGAGCACATCTACCTTGACAATGCACTAGAGATGTGCCTCTGTGCTTTGCTGTCGTCTCCCTTGCCTCCTCCCCAGGTCAGATCTGTTTTATCCAGAGACCCTTGTACGTCTCAGCTCAGGGCAGAAGGGTCCTGCAGCTCCATACAGACTCTCCTCTTTGTCTTGATGTGCGTCTCTCTTGTGCCCCTGACCCCTCAGTGTGGCAGTGGTACTCACAAGCTATATGTTCTTCACAG
Seq C2 exon
TGGATCGGATCATTGGCTTGGACCAAGTGGCTGGAATGTCCGAGACAGCACTACCTGGTGCCTTCAAGACCCGGAAGGGCATGTTCCGTACTGTCGGACAGCTGTACAAGGAGCAGCTGGCCAAGCTCATGGCCACGTTGAGGAATACCAACCCCAACTTCGTGCGCTGCATCATTCCCAACCATGAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022443-Myh9:NM_022410:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(9.4=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTATAAAGCTGACGAGTGGC
R:
TCTCATGGTTGGGAATGATGCA
Band lengths:
302-2175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: