HsaINT0108162 @ hg19
Intron Retention
Gene
ENSG00000145555 | MYO10
Description
myosin X [Source:HGNC Symbol;Acc:7593]
Coordinates
chr5:16762154-16762746:-
Coord C1 exon
chr5:16762654-16762746
Coord A exon
chr5:16762223-16762653
Coord C2 exon
chr5:16762154-16762222
Length
431 bp
Sequences
Splice sites
5' ss Seq
GCGGTATGT
5' ss Score
9.45
3' ss Seq
TTTTTTTTTTTTTTTTTTAGAAT
3' ss Score
12.07
Exon sequences
Seq C1 exon
AAACTTGGCCTCCTAGCCCTTATCAATGAAGAAAGCCATTTTCCTCAAGCCACAGACAGCACCTTATTGGAGAAGCTACACAGTCAGCATGCG
Seq A exon
GTATGTCAAAACCTGCAATTCTTCATCACATTGGAGTAGCACGTCTGTGGGTTGGGATTACACACCAGACATGTCAGTCCGCTGGCCCAACTGTGCCTCCCACATTGAACATTTATTCTCAAACCAAAGCTGTTCTTCTATTACTAGAACTAAATTGAAATAAGCAAAAGGGTTAGATTTGGAGCTACTTGTTAGAATGCCCAAGCTTATTTAGAGAACGTAAAATTGTTAATCTATTATAATGACACAATCGAGAGTTAACATGGTTTTTATAAAGTGCACCATATGCCGTGTCCTGAAACGCAGATCCATGGCAAGTTTGGAAATGATTTTCACTGTCTTTTGTATTTAGTGTTCTCTGGAAGTCAAAGGAAATCAGTGAGTGAAATAAGGCATTGTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTAG
Seq C2 exon
AATAACCACTTTTATGTGAAGCCCAGAGTTGCAGTTAACAATTTTGGAGTGAAGCACTATGCTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145555-MYO10:NM_012334:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.5=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)