DreINT0100302 @ danRer10
Intron Retention
Gene
ENSDARG00000074723 | myo10l1
Description
myosin X-like 1 [Source:ZFIN;Acc:ZDB-GENE-080425-1]
Coordinates
chr6:10905284-10905529:-
Coord C1 exon
chr6:10905437-10905529
Coord A exon
chr6:10905353-10905436
Coord C2 exon
chr6:10905284-10905352
Length
84 bp
Sequences
Splice sites
5' ss Seq
TCTGTGAGT
5' ss Score
7
3' ss Seq
TTGAGGTTGTTTTTCCACAGACT
3' ss Score
7.91
Exon sequences
Seq C1 exon
AAATTGGGCATGTTAGCTTTGGTTAATGAGGAGAGCAGATTTCCCAAAGGCACTGACTTCACCTTGCTGGAGAAACTACACGGCAGACACTCT
Seq A exon
GTGAGTTATATTCTCATTAGAAAGACACAATGAAATTAATCTACGAATGTAAAAAACTGAACACTTGAGGTTGTTTTTCCACAG
Seq C2 exon
ACTAATCCATACTATGTGAAACCCAGACTGGCAGACCATCAGTTTGGGATAAAACATTACGCTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074723:ENSDART00000151252:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(12.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(8.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGCATGTTAGCTTTGGTT
R:
CTCTCCAGCGTAATGTTTTATCCCA
Band lengths:
159-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]