HsaINT1024194 @ hg38
Intron Retention
Gene
ENSG00000145555 | MYO10
Description
myosin X [Source:HGNC Symbol;Acc:HGNC:7593]
Coordinates
chr5:16762045-16762637:-
Coord C1 exon
chr5:16762545-16762637
Coord A exon
chr5:16762114-16762544
Coord C2 exon
chr5:16762045-16762113
Length
431 bp
Sequences
Splice sites
5' ss Seq
GCGGTATGT
5' ss Score
9.45
3' ss Seq
TTTTTTTTTTTTTTTTTTAGAAT
3' ss Score
12.07
Exon sequences
Seq C1 exon
AAACTTGGCCTCCTAGCCCTTATCAATGAAGAAAGCCATTTTCCTCAAGCCACAGACAGCACCTTATTGGAGAAGCTACACAGTCAGCATGCG
Seq A exon
GTATGTCAAAACCTGCAATTCTTCATCACATTGGAGTAGCACGTCTGTGGGTTGGGATTACACACCAGACATGTCAGTCCGCTGGCCCAACTGTGCCTCCCACATTGAACATTTATTCTCAAACCAAAGCTGTTCTTCTATTACTAGAACTAAATTGAAATAAGCAAAAGGGTTAGATTTGGAGCTACTTGTTAGAATGCCCAAGCTTATTTAGAGAACGTAAAATTGTTAATCTATTATAATGACACAATCGAGAGTTAACATGGTTTTTATAAAGTGCACCATATGCCGTGTCCTGAAACGCAGATCCATGGCAAGTTTGGAAATGATTTTCACTGTCTTTTGTATTTAGTGTTCTCTGGAAGTCAAAGGAAATCAGTGAGTGAAATAAGGCATTGTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTAG
Seq C2 exon
AATAACCACTTTTATGTGAAGCCCAGAGTTGCAGTTAACAATTTTGGAGTGAAGCACTATGCTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145555:ENST00000513610:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.5=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains