GgaINT0096735 @ galGal3
Intron Retention
Gene
ENSGALG00000012954 | MYO10
Description
NA
Coordinates
chr2:77281483-77282373:+
Coord C1 exon
chr2:77281483-77281575
Coord A exon
chr2:77281576-77282304
Coord C2 exon
chr2:77282305-77282373
Length
729 bp
Sequences
Splice sites
5' ss Seq
GCTGTATGT
5' ss Score
5.1
3' ss Seq
TTTCTTTTTCCTCCAATTAGAAC
3' ss Score
9.16
Exon sequences
Seq C1 exon
AAACTTGGCCTGCTGGCACTCATCAATGAAGAAAGCCATTTCCCTCAGGCTACTGACTCCACTTTACTGGAGAAGCTGAATGCCCAGCATGCT
Seq A exon
GTATGTGATGTTTTGCTGATGTGTTCTGTGTGCAGTATGGAGGGTCCTTCTGCTTTTGTAGAAGTCTGTGGTTCAAATATGGTTCATAGTTGTAGAGGATGTCTTGGACGTGATCCTTCTTGCATAGCAGGCCACATTGTTTGCTTTGAGGACTGAGTCAGTTATCTTCTTAGTGTCCAGTCATATCTTGCTACTATCTGATTAGAGTTCCATATTGGTGAACAGGTCAAATTCTGCTCCTAGATCAGTGACAACCTGCAGTAACCCAATTTACCTAGATTTTCCATTTCCCTTGATTTAACGAAGTAATCAAATTGATGTCATTTACCAAAGGGTTGCTGTTCTCTCTGTACAAATTAGTATTATCTTTAGTTGTAATCCTGGAAATATTTTCAAGAATTTTGGTGGTTCAGGCACATGTCTACTGATCTTTGTAACTGCTGGTTTAAGGCAGAGCAGAATGCCTTTAATAGGTGGATTTGCCAGATGGTTTCAGCTTTAGTATAATGCCTTTGTAGATGCTATAAATCTCTTGTTTTTATTGCATTTGGAGCATCCCAGGCTAACAGATCCTATTATTATAAGATGGTTGTTTACTTTTGCAGAACAAATCTTCTGGGAAGTTTGCAGAAAGACAATGTTTTGTTTAAATCAGTGTTTAGAAGATAATACTATTCTATTCCCCGACTCCCTCAAAATATTTCTCTCTTTTCTTTTTCCTCCAATTAG
Seq C2 exon
AACAATCCTTTTTATGTAAAACCACGAGTTGCTGTTCACAACTTTGGAGTGAAGCACTATGCTGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012954:ENSGALT00000021128:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.5=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]