Special

HsaINT0108833 @ hg38

Intron Retention

Gene
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr15:52256639-52261127:-
Coord C1 exon
chr15:52260862-52261127
Coord A exon
chr15:52256721-52260861
Coord C2 exon
chr15:52256639-52256720
Length
4141 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
TTGTTTAAATTGTATTTCAGTTT
3' ss Score
7.9
Exon sequences
Seq C1 exon
GAGGATGACAGTCACCTGAAGGTGTTCTGTGAGCTCCTGGGCCTGGAGAGTGGCAGAGTTGCTCAGTGGCTGTGCAATCGCAAAATCGTCACAAGCTCTGAGACGGTGGTAAAACCCATGACCAGGCCTCAGGCTGTCAACGCCAGGGATGCACTGGCCAAAAAGATCTATGCTCACCTGTTCGACTTCATTGTGGAGAGAATTAACCAAGCGTTGCAGTTTTCAGGCAAGCAGCACACTTTTATTGGTGTTTTGGACATTTATGG
Seq A exon
GTAAGATTCTCTTCAGTGAGCCTGTCTTTCCTCCTTTAAATGTTGAGAGCCGCATGGTTTTTAGATCATTTTGTTCTGGTTCTTTTGTATTTCACATGATTAGAAAGATAACATTCTCTGCTTTTGCCCCTATAGATGCTAAGTACACTCTCCTGGGCTATGGTGCCATTTATTCAAAGTGCATTAAAGAGATGCTGAATTAGGAATGACCAATGTCAAGAGCTTACTGTGTGCCAGCTCTGAGGCTGCTTGGCTTCCATGGGCTTTCTCACTTAATTTCTTAAACAACCTTATAACTATCCCCGTTGTAGAGCTGCAACAACCAAGGCTTAGAAAGACTCAATAACTTCGTCACAATTGCTCCGCTGGTGGGAGAACCCAGCACAGTTGTGAGGCTCCTGCTTTTGCTTTTCCCACCAAAGGCCCCTGAGGTGTGGAGCCCCAAGGTCCCTTCCCATTCGAATCACAGGGGATGACAAGTCACCTAGGCTTGCACCTTGCCCAAGCCCAGCGGCCAGAGGTGGACTGAACCCAGGTCTCTGATCAACCACCCCCCTACCCCAATCCTTTTCCGTTCTTGGGTGAGAAGGTCTTGGATTTTCCCCAGCCCTCCTCCAGGAGGTCTTACCCTTCATCCCACCCTGGAGTTGGGTTCTTTTTCATTCTCTCTGCCTGGTCCTCCTTTTCTAAACCCCGGGCTCAGCTCGTGCTGAAACAGCTATGGAGTAACCAGAGTGGAAGCTGGCATGGAGGGCTCTGTGGAGATTGTTATCCTTCAGGCTTTTCTAGCAGCTGGCCCCAGTGCCCAGCCCTTGCCCCTCTCCTGGGACCCACCCTGGTTTCTTAACAGGAGAAGGGGAAGATTGACCCATGAAAGGCATCCTGGAGTGTTCCACCTGGATTGGGGGATCTTCCCCACACCATGGCAAAAAGCAGCTCAACCCCATTCCCCATGCAAAGGGGAGAGCTGAGCTCTGGCCTTCACGGCCCTGCTGCTGCCTCCTGGGGAGGAGGGGGACAGGGCCACACCACGCTGTTGGACTTGCACCCAGGTGGAGAGGCAGCTTTTCCCATAGCTGTCAAATGGGAGACAGTCAAGGGAGCTGCTTTGTTTAATTTAGATCCTAAGTTAATACATATGGCTCCCAATTAATAGTACGTGTCAACAGTTATAAAATGCTTAATACATTACTGGGATAGCCTAGTCAATTATTTACCTTGTCTTCTTCCCAGAAAGTGTTTGAGCAGCCAGTTAAAAGCTTAAGTGAACTTTTAAAAATGGATAGTCCTCATTAAAAATAGTCCTGTTTCATTGTGGTGGAAATACGTAATTATTCTGTTATTCCCTGTTCTTTTGGGTGTTTTTAAGATGTATTTTTAAATGACAGTCCTTTATTTTAACAGTATATTATTTCTTTCTTTTTTTTCTTTTTTTTTTTTTTGAGACGGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCACCATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTCCTGTCTCAGCCTCCTGGGTAGCTGGGACTACAGGCACCTGCCACTACGCCCGGCTGATTTTTTTTATTTTTAGTAGAGACTGGGTTTCACCGTATTAGCCAGGATGGTCTCGATCTCCTGACCTTGTGATCTGTCCATCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCACCCAGCCATTATTTCATATTTTTATCTAACAGATGTTTATGTCCCAGGCACTGTGTTGGAGGCAGTGGTTGAACAGCATAGATGTACGGCTCCTGCCACCGTGGGACTGAGACTGGTGAGGGCAGCAGGCCGGCAGTAGAGGTTAGGATGAGTCCTGGGAAGGGAGGAAGGTGTGCTGGAGGTTAGCAGAGGGTGGGGACAGAGCAAGGGCAGCCATGTGCAAGGAGTAGTGAGCTGGACGGTGGCCCCCAGGCAGGATCCAGAACCACTGTAATAAGGAATTTGAATTTTTCAGCTATGTGGAAAAACCTGAGACAAGAGTATTTATAAATACACAAAGACTTGTTAGAGTAAATTATTTTAAGATTCCTCTCAAAAATTCTAACAATAGCCTGTTTGCTGCCACCCTTGAGTTCATGATACGCCTCCAAAAAAATCAGCTTTCCTCTAGGCAGCAGGGCTGCAGCCTGGGGCCAAGCCTTTCCCGCCCCCTCCAGCAGCCTCGCTTCTAGGCTAACCCTCGCCTAGGCATACCTGCAACTTTTGAGAAAGCTCTTTTTGACTTGGAAATAAGGAAGCCTCAAAGGAAGACTTAGCATCTTTGAAAGCCAGTAAAGCTGAAGCTGTGAGCTTCAAGGTCTAAGCTGAGAGTGAATGAAGGCTGGTGACTCCCCAGCCTGTCGTGTATTTATGTTCTTTGGACCCAGAGTTGGAAAAACCTGGGTCTGGGGGTCAGACCCCTGGGAATGAGCTCCGTAGCATACCAGTTACGTGACCTCAAGAAAGTCACAGAACCTCTCCAAGCCTTAGTTTCTGCATCTACAAGATGGGGCCTCTCTTGCAGGGTGATTTTGAACATATGATGGAAGAAATTATGCAGGTACCTTGAAAACCATAAGCATGGTTCCAGTGTGAAGTGTTTTCATAGCCAATGTGCCTCTAGCATTTTAAGTCACAGATCTAGGTCTTTCCATGGGTCCTAAACTTCAGATTTTTGTGCCCCAAAATAATGCATTGATGTTTGACATTTTGCCAGGTTCTAGAAAGCCCTGCCCTTGGCCCCAGCTGTGAGCTGCAGAGCTCAGTGAGACCCTTTTTAATCTTCCCCCAGGCCCAGCCCTGGCCTTGCTTCCATGAGCAGACCAGCCTCCGAATCTCTGAGCCACCAAGGCTGCGTGTGGAATGGGGCTGTCAGAGCTGCTATGAATCACCCTGGAGCTGTCTAGAGGACAGTCCAGGTTCTTACCCTGCCCAGGAATTCCAGATTGAGCCAAACCAGCTCAGTCAAGTGAGACTCCCAGGGGACCTGTGATAGGAGCCGGCAGGAACCTCTCAGGATTAGAGCGATTAAGAACAAAGCTTTGGAGGCACCAAGCACTGGGGTCGAATTGCATTTCTGGCACCACTTGCTGGCTGTTGGTCCTCACCATGGTCACTCCTTCTCTGACCCTCGTGTGTGACAGTGGAGTCACAGGAGCCCTTCACATAGGGCTGTGTTAGGGTTATAGGAGGTGACGTGCATAAATGCTGACACCTTAAAAGTGCTCAGCAAGCTGCCTTCCAGCAGGAGCTCATCTGGCCAGGTGGTAAATTTGGTGCCTCTGTTTTGTTCGGCCCACGTTTTGCAGAGTGGGATTATTCACTTAAAAGTCCCAGTTTTCTGACTTTTCTTAAGAATCAATTAATCTAACATCCTGGGCCGCATTCATCCATGGCTACATCCGGCAGGAGCTGAGTAGCAGCTGCCTCCCCAAGGGCTCCTCTCAGTTCTTGAGCTTGCAACTCCAAGGCAACTGCAGAGGCAGCTGATGAAAGTCTGAATATGGAAGCCAGCCATGTCTGTCTCGTCCCTGATGGGGTGTGCTGGGCTGTAGGATATGAAATGACTTTGCCCTTTTCCTCTAGGAGCTATGAAAGCACCCCTTAGGGAGGCAAAATTGTGCTGCAGTTGTGCTGCTCCTCCCCTCAACAGACAAGGAGAGAATAGGAAACCACATTGCCTTCTCATTGGAGGCACAGGCATCACAGTCAGGCAGCTTCGCAGCTAAGTTCTGACACAAGCTGTGTGACCTTTGGCAAGTTTCTTAACCTCTCGGGCTTATTTTCTGACCTATAAAGTCAGAATAATAATTGCCAATATCACTGTTGTTGTGCGGACTACACCATATGGTGACATGCTTATTTTAATGCCTGGCTTGAGGTAGGTGTTTTATACCTACCAGATTTCTTCCGGGGGACAACCAGGAAAAGGGTTATTTATAAACTGACTACTAGGATATCATTAAAACCAGAAGCTTTGAGGGGTATTTAAAACTTGTAGAAGACATAGCAAACGTTTAAGCTTTTAAGTGTCAAAAAATATCTATAAACAAATGCATATGTCTTGCTTCAGGTTATATTTTAACTTGTTTAAATTGTATTTCAG
Seq C2 exon
TTTTGAAACCTTTGATGTGAACAGCTTTGAACAATTTTGCATCAATTACGCTAATGAAAAACTGCAACAACAGTTTAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128833:ENST00000261839:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.001 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0006316=Myosin_head=FE(13.1=100)
A:
NA
C2:
PF0006316=Myosin_head=PD(0.6=28.6)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
ALTERNATIVE
Zebrafish
(danRer10)
ALTERNATIVE
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains
  • Pre-implantation embryo development